Parental gene:

PGAM1, ENSGGOG00000028602

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:10:110782294..110789408(+)


>ENSGGOG00000028602
CGCTTCAGCGGCTGGTACGACGCCGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTACGAGA
TGCTGGCTATGAGTTTGACATCTGCTTCACCTCAGTGCAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCA
TTGATCAGATGTGGCTGCCAGTGGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAA
GCCGAAACTGCTGCAAAGCATGGTGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCGCCGATGGA
GCCCGACCTTTACTATCTCCTTTTTTGTGTTTCCATAGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCT
GTGAGAGTCTGAAGGATACTATTGCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAA
CGTGTACTGATTGCAGCCCATGGCAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCAT
GGAGCTGAACCTGCCGACTGGTATTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTTC
TGGGGGATGAAGAGACGGTGCGCAAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 248 .16 RPM
SRP007412_cerebellum 113 .15 RPM
SRP007412_heart 50 .91 RPM
SRP007412_kidney 100 .71 RPM
SRP007412_liver 86 .65 RPM
SRP007412_testis 83 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012697 possible_ortholog 2 retrogenes
retro_btau_1611, retro_btau_472,
Canis familiaris ENSCAFG00000009062 possible_ortholog 1 retrogene
retro_cfam_1297,
Callithrix jacchus ENSCJAG00000016575 possible_ortholog 1 retrogene
retro_cjac_370,
Cavia porcellus ENSCPOG00000006844 possible_ortholog 4 retrogenes
retro_cpor_158, retro_cpor_539, retro_cpor_605, retro_cpor_660,
Erinaceus europaeus ENSEEUG00000005630 ortholog_one2one 1 retrogene
retro_eeur_680,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 possible_ortholog 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Loxodonta africana ENSLAFG00000015979 possible_ortholog 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 possible_ortholog 1 retrogene
retro_mmur_135,
Myotis lucifugus ENSMLUG00000009117 possible_ortholog 6 retrogenes
retro_mluc_1280, retro_mluc_1595, retro_mluc_1741, retro_mluc_2246, retro_mluc_632, retro_mluc_745,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mustela putorius furo ENSMPUG00000017045 possible_ortholog 1 retrogene
retro_mputfur_1409,
Mus musculus ENSMUSG00000011752 ortholog_one2one 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Nomascus leucogenys ENSNLEG00000013804 possible_ortholog 10 retrogenes
retro_nleu_1367, retro_nleu_1535, retro_nleu_1658, retro_nleu_2012, retro_nleu_2139, retro_nleu_2196, retro_nleu_2205, retro_nleu_2488, retro_nleu_2667, retro_nleu_280,
Oryctolagus cuniculus ENSOCUG00000005679 possible_ortholog 5 retrogenes
retro_ocun_1016, retro_ocun_1081, retro_ocun_350, retro_ocun_706, retro_ocun_976,
Pongo abelii ENSPPYG00000002530 possible_ortholog 9 retrogenes
retro_pabe_1325, retro_pabe_2309, retro_pabe_2554, retro_pabe_2639, retro_pabe_2881, retro_pabe_3389, retro_pabe_3639, retro_pabe_3749, retro_pabe_671,
Pan troglodytes ENSPTRG00000002807 possible_ortholog 12 retrogenes
retro_ptro_1082, retro_ptro_1580, retro_ptro_1645, retro_ptro_1755, retro_ptro_2080, retro_ptro_2361, retro_ptro_2889, retro_ptro_2890, retro_ptro_3114, retro_ptro_3238, retro_ptro_634, retro_ptro_714,
Rattus norvegicus ENSRNOG00000050585 ortholog_one2many 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Sarcophilus harrisii ENSSHAG00000018230 ortholog_one2one 1 retrogene
retro_shar_323,
Sus scrofa ENSSSCG00000010517 possible_ortholog 1 retrogene
retro_sscr_373,
Ictidomys tridecemlineatus ENSSTOG00000025955 possible_ortholog 1 retrogene
retro_itri_1187,
Tupaia belangeri ENSTBEG00000005913 possible_ortholog 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_716 95.10 61.37
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2. retro_ggor_738 77.78 76.82
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3. retro_ggor_827 84.32 100.00
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4. retro_ggor_1220 85.20 83.26
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5. retro_ggor_1500 67.20 52.79
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6. retro_ggor_1667 74.77 91.85
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7. retro_ggor_1824 87.80 87.55
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8. retro_ggor_2061 61.48 57.51
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9. retro_ggor_2118 61.48 57.51
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10. retro_ggor_2353 88.84 100.00
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11. retro_ggor_2849 80.14 59.66
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12. retro_ggor_3005 80.00 62.23
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13. retro_ggor_3034 94.85 100.00
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Download FASTA sequences of all ENSGGOG00000028602 retrocopies