Parental gene:

PGAM1, ENSG00000171314

Aliases:PGAM1, HEL-S-35, PGAM-B, PGAMA
Description:phosphoglycerate mutase 1 (brain) [Source:HGNC Symbol;Acc:8888]
Organism:Human (Homo sapiens)
Coordinates:10:99185916..99193198(+)


>ENSG00000171314
ATGGCCGCCTACAAACTGGTGCTGATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCCGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTACGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCATTGATCAGATGTGGCTGCCA
GTGGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAAGCAGAAACTGCTGCAAAGCA
TGGTGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCCGACCATCCTTTCTACA
GCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAGTCTGAAGGATACTATT
GCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAACGTGTACTGATTGCAGCCCATGG
CAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCGACTGGTA
TTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTTCTGGGGGATGAAGAGACGGTGCGC
AAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 19 .84 RPM
bodymap2_adrenal 25 .01 RPM
bodymap2_brain 35 .75 RPM
bodymap2_breast 22 .74 RPM
bodymap2_colon 22 .08 RPM
bodymap2_heart 24 .70 RPM
bodymap2_kidney 27 .55 RPM
bodymap2_liver 17 .30 RPM
bodymap2_lung 24 .98 RPM
bodymap2_lymph_node 22 .86 RPM
bodymap2_ovary 26 .16 RPM
bodymap2_prostate 27 .40 RPM
bodymap2_skeletal_muscle 3 .98 RPM
bodymap2_testis 23 .06 RPM
bodymap2_thyroid 16 .06 RPM
bodymap2_white_blood_cells 37 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012697 possible_ortholog 2 retrogenes
retro_btau_1611, retro_btau_472,
Canis familiaris ENSCAFG00000009062 possible_ortholog 1 retrogene
retro_cfam_1297,
Callithrix jacchus ENSCJAG00000016575 ortholog_one2one 1 retrogene
retro_cjac_370,
Erinaceus europaeus ENSEEUG00000005630 possible_ortholog 1 retrogene
retro_eeur_680,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Gorilla gorilla ENSGGOG00000028602 possible_ortholog 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 ortholog_one2many 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 possible_ortholog 1 retrogene
retro_mmur_135,
Myotis lucifugus ENSMLUG00000009117 possible_ortholog 6 retrogenes
retro_mluc_1280, retro_mluc_1595, retro_mluc_1741, retro_mluc_2246, retro_mluc_632, retro_mluc_745,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mustela putorius furo ENSMPUG00000017045 ortholog_one2one 1 retrogene
retro_mputfur_1409,
Mus musculus ENSMUSG00000011752 possible_ortholog 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Nomascus leucogenys ENSNLEG00000013804 possible_ortholog 10 retrogenes
retro_nleu_1367, retro_nleu_1535, retro_nleu_1658, retro_nleu_2012, retro_nleu_2139, retro_nleu_2196, retro_nleu_2205, retro_nleu_2488, retro_nleu_2667, retro_nleu_280,
Oryctolagus cuniculus ENSOCUG00000005679 possible_ortholog 5 retrogenes
retro_ocun_1016, retro_ocun_1081, retro_ocun_350, retro_ocun_706, retro_ocun_976,
Pongo abelii ENSPPYG00000002530 ortholog_one2one 9 retrogenes
retro_pabe_1325, retro_pabe_2309, retro_pabe_2554, retro_pabe_2639, retro_pabe_2881, retro_pabe_3389, retro_pabe_3639, retro_pabe_3749, retro_pabe_671,
Rattus norvegicus ENSRNOG00000050585 possible_ortholog 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Sarcophilus harrisii ENSSHAG00000018230 possible_ortholog 1 retrogene
retro_shar_323,
Sus scrofa ENSSSCG00000010517 ortholog_one2one 1 retrogene
retro_sscr_373,
Tupaia belangeri ENSTBEG00000005913 possible_ortholog 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_885 95.33 59.06
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2. retro_hsap_913 78.61 78.74
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3. retro_hsap_1048 85.71 95.28
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4. retro_hsap_1052 99.61 100.00
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5. retro_hsap_1142 100.00 100.00
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6. retro_hsap_2235 79.68 97.24
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7. retro_hsap_2604 88.78 80.31
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8. retro_hsap_3083 57.59 61.81
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9. retro_hsap_3488 84.28 90.16
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10. retro_hsap_4249 77.64 62.99
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11. retro_hsap_4686 75.86 79.53
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12. retro_hsap_4821 78.08 57.09
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Download FASTA sequences of all ENSG00000171314 retrocopies