RetrogeneDB - Parental gene ENSFCAG00000023973 details

                            
>ENSFCAG00000023973
TGTAAAAAAACCGAAAAGACAGACCCAAAGGTCAGAAAGGAATTAGAAACTGTTCGTTATGGTGTTTATGGAACTGCTCG

CCGAAAGAAGAAGGTGGTTCATAGAACAGCTACAGCAGATGATAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGAGTAA

ACAATATCTCTGGTATTGAAGAAGTGAATATGTTCACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAG

GCATCCCTGGCTGCGAACACTTTCACCATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGTTACCCAGTATCTT

AAACCAACTTGGTGCAGACAGTCTGACTAGTTTAAGAAGGCTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAGG

CACCACTTGCTACCGGAGAGGATGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAAGCTTCCAAGAATGAA

GCAAACTGA

Library	Parental gene expression (RPM)
SRP017611_brain	42 .81 RPM
SRP017611_kidney	162 .11 RPM
SRP017611_liver	109 .78 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011563	ortholog_one2one	14 retrogenes	retro_amel_1257, retro_amel_1279, retro_amel_1324, retro_amel_1334, retro_amel_1433, retro_amel_166, retro_amel_1769, retro_amel_182, retro_amel_1841, retro_amel_480, retro_amel_513, retro_amel_784, retro_amel_908, retro_amel_986,
Bos taurus	ENSBTAG00000010012	possible_ortholog	5 retrogenes	retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Choloepus hoffmanni	ENSCHOG00000001861	ortholog_one2one	13 retrogenes	retro_chof_1027, retro_chof_1166, retro_chof_117, retro_chof_1397, retro_chof_1406, retro_chof_1884, retro_chof_1960, retro_chof_2194, retro_chof_2682, retro_chof_2703, retro_chof_344, retro_chof_364, retro_chof_700,
Callithrix jacchus	ENSCJAG00000016600	possible_ortholog	4 retrogenes	retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Cavia porcellus	ENSCPOG00000012832	ortholog_one2one	1 retrogene	retro_cpor_81,
Ciona savignyi	ENSCSAVG00000009653	ortholog_one2many	1 retrogene	retro_csav_25,
Dasypus novemcinctus	ENSDNOG00000018682	ortholog_one2one	4 retrogenes	retro_dnov_1958, retro_dnov_2107, retro_dnov_497, retro_dnov_817,
Equus caballus	ENSECAG00000021629	possible_ortholog	1 retrogene	retro_ecab_200,
Homo sapiens	ENSG00000145741	ortholog_one2one	11 retrogenes	retro_hsap_1215, retro_hsap_1396, retro_hsap_2259, retro_hsap_2525, retro_hsap_2819, retro_hsap_2964, retro_hsap_3533, retro_hsap_3551, retro_hsap_3972, retro_hsap_4270, retro_hsap_625,
Microcebus murinus	ENSMICG00000017182	possible_ortholog	3 retrogenes	retro_mmur_1219, retro_mmur_1301, retro_mmur_651,
Myotis lucifugus	ENSMLUG00000012912	ortholog_one2one	11 retrogenes	retro_mluc_1024, retro_mluc_1349, retro_mluc_1459, retro_mluc_1748, retro_mluc_1820, retro_mluc_1823, retro_mluc_2560, retro_mluc_2602, retro_mluc_482, retro_mluc_682, retro_mluc_694,
Macaca mulatta	ENSMMUG00000022291	ortholog_one2many	2 retrogenes	retro_mmul_105, retro_mmul_2424,
Monodelphis domestica	ENSMODG00000001762	possible_ortholog	3 retrogenes	retro_mdom_189, retro_mdom_454, retro_mdom_931,
Mustela putorius furo	ENSMPUG00000005864	ortholog_one2one	28 retrogenes	retro_mputfur_1125, retro_mputfur_1149, retro_mputfur_1267, retro_mputfur_1289, retro_mputfur_1319, retro_mputfur_1321, retro_mputfur_1386, retro_mputfur_1414, retro_mputfur_1472, retro_mputfur_1525, retro_mputfur_1548, retro_mputfur_1576, retro_mputfur_1599, retro_mputfur_246, retro_mputfur_324, retro_mputfur_392, retro_mputfur_403, retro_mputfur_431, retro_mputfur_618, retro_mputfur_661, retro_mputfur_724, retro_mputfur_728, retro_mputfur_753, retro_mputfur_760, retro_mputfur_795, retro_mputfur_901, retro_mputfur_926, retro_mputfur_972,
Mus musculus	ENSMUSG00000021660	ortholog_one2one	11 retrogenes	retro_mmus_1904, retro_mmus_2445, retro_mmus_2769, retro_mmus_3054, retro_mmus_3272, retro_mmus_3344, retro_mmus_3525, retro_mmus_443, retro_mmus_451, retro_mmus_470, retro_mmus_707,
Nomascus leucogenys	ENSNLEG00000004718	possible_ortholog	9 retrogenes	retro_nleu_1081, retro_nleu_1199, retro_nleu_1284, retro_nleu_1446, retro_nleu_1797, retro_nleu_2526, retro_nleu_451, retro_nleu_496, retro_nleu_734,
Pan troglodytes	ENSPTRG00000016979	ortholog_one2one	12 retrogenes	retro_ptro_1470, retro_ptro_1599, retro_ptro_1675, retro_ptro_1912, retro_ptro_2006, retro_ptro_2413, retro_ptro_2494, retro_ptro_2697, retro_ptro_2896, retro_ptro_455, retro_ptro_832, retro_ptro_959,
Pteropus vampyrus	ENSPVAG00000007160	ortholog_one2one	11 retrogenes	retro_pvam_1011, retro_pvam_241, retro_pvam_301, retro_pvam_440, retro_pvam_456, retro_pvam_515, retro_pvam_602, retro_pvam_647, retro_pvam_70, retro_pvam_882, retro_pvam_919,
Sorex araneus	ENSSARG00000007736	ortholog_one2one	5 retrogenes	retro_sara_195, retro_sara_279, retro_sara_354, retro_sara_427, retro_sara_74,
Tarsius syrichta	ENSTSYG00000001295	ortholog_one2one	7 retrogenes	retro_tsyr_1360, retro_tsyr_1388, retro_tsyr_212, retro_tsyr_707, retro_tsyr_878, retro_tsyr_90, retro_tsyr_954,
Tursiops truncatus	ENSTTRG00000007290	ortholog_one2one	2 retrogenes	retro_ttru_1883, retro_ttru_391,
Vicugna pacos	ENSVPAG00000009607	ortholog_one2one	2 retrogenes	retro_vpac_185, retro_vpac_467,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_28	75.51	88.89	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_187	87.29	72.84	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_188	85.71	73.46	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_225	86.14	61.73	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_419	76.81	85.19	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_fcat_593	64.96	71.60	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_fcat_919	71.01	83.95	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_fcat_1044	78.10	64.20	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_fcat_1378	71.11	54.94	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_fcat_1438	80.00	83.33	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000023973 retrocopies

Parental gene:	BTF3, ENSFCAG00000023973
Aliases:	None
Description:	basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]
Organism:	*Cat (Felis catus)*
Coordinates:	A1:138586785..138590017(+)

Parental gene:

BTF3, ENSFCAG00000023973