Parental gene:

BTF3, ENSPTRG00000016979

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:42094162..42101213(-)


>ENSPTRG00000016979
ATGCGACGGACAGGCGCACCCGCTCAGGCTGACTCTCGGGGGCGAGGTCGAGCCAGGGGCGGCTGCCCTGGGGGCGAGGC
GACGCTGTCTCAACCTCCACCTCGCGGCGGAACCCGAGGACAGGAGCCTCAGATGAAAGAAACAATCATGAACCAGGAAA
AACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCGCAGAAAGAAGAAGGTGGTTCATAGAACA
GCCACAGCAGATGACAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAAACAATATCTCTGGTATTGAAGAGGTGAA
TATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAGGCATCTCTGGCAGCGAACACTTTCACCA
TTACAGGCCATGCTGAGACGAAGCAGCTGACAGAAATGCTACCCAGCATCTTAAACCAGCTTGGTGCGGATAGTCTGACT
AGTTTAAGGAGACTGGCCGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGA
TGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAGGCAAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 32 .14 RPM
SRP007412_cerebellum 30 .26 RPM
SRP007412_heart 35 .50 RPM
SRP007412_kidney 37 .40 RPM
SRP007412_liver 34 .67 RPM
SRP007412_testis 34 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011563 ortholog_one2one 14 retrogenes
retro_amel_1257, retro_amel_1279, retro_amel_1324, retro_amel_1334, retro_amel_1433, retro_amel_166, retro_amel_1769, retro_amel_182, retro_amel_1841, retro_amel_480, retro_amel_513, retro_amel_784, retro_amel_908, retro_amel_986,
Choloepus hoffmanni ENSCHOG00000001861 ortholog_one2one 13 retrogenes
retro_chof_1027, retro_chof_1166, retro_chof_117, retro_chof_1397, retro_chof_1406, retro_chof_1884, retro_chof_1960, retro_chof_2194, retro_chof_2682, retro_chof_2703, retro_chof_344, retro_chof_364, retro_chof_700,
Callithrix jacchus ENSCJAG00000016600 possible_ortholog 4 retrogenes
retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Cavia porcellus ENSCPOG00000012832 ortholog_one2one 1 retrogene
retro_cpor_81,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Dasypus novemcinctus ENSDNOG00000018682 ortholog_one2one 4 retrogenes
retro_dnov_1958, retro_dnov_2107, retro_dnov_497, retro_dnov_817,
Felis catus ENSFCAG00000023973 ortholog_one2one 10 retrogenes
retro_fcat_1044, retro_fcat_1378, retro_fcat_1438, retro_fcat_187, retro_fcat_188, retro_fcat_225, retro_fcat_28, retro_fcat_419, retro_fcat_593, retro_fcat_919,
Homo sapiens ENSG00000145741 ortholog_one2one 11 retrogenes
retro_hsap_1215, retro_hsap_1396, retro_hsap_2259, retro_hsap_2525, retro_hsap_2819, retro_hsap_2964, retro_hsap_3533, retro_hsap_3551, retro_hsap_3972, retro_hsap_4270, retro_hsap_625,
Myotis lucifugus ENSMLUG00000012912 ortholog_one2one 11 retrogenes
retro_mluc_1024, retro_mluc_1349, retro_mluc_1459, retro_mluc_1748, retro_mluc_1820, retro_mluc_1823, retro_mluc_2560, retro_mluc_2602, retro_mluc_482, retro_mluc_682, retro_mluc_694,
Macaca mulatta ENSMMUG00000022291 ortholog_one2many 2 retrogenes
retro_mmul_105, retro_mmul_2424,
Monodelphis domestica ENSMODG00000001762 possible_ortholog 3 retrogenes
retro_mdom_189, retro_mdom_454, retro_mdom_931,
Mustela putorius furo ENSMPUG00000005864 ortholog_one2one 28 retrogenes
retro_mputfur_1125, retro_mputfur_1149, retro_mputfur_1267, retro_mputfur_1289, retro_mputfur_1319, retro_mputfur_1321, retro_mputfur_1386, retro_mputfur_1414, retro_mputfur_1472, retro_mputfur_1525, retro_mputfur_1548, retro_mputfur_1576, retro_mputfur_1599, retro_mputfur_246, retro_mputfur_324, retro_mputfur_392, retro_mputfur_403, retro_mputfur_431, retro_mputfur_618, retro_mputfur_661, retro_mputfur_724, retro_mputfur_728, retro_mputfur_753, retro_mputfur_760, retro_mputfur_795, retro_mputfur_901, retro_mputfur_926, retro_mputfur_972,
Mus musculus ENSMUSG00000021660 ortholog_one2one 11 retrogenes
retro_mmus_1904, retro_mmus_2445, retro_mmus_2769, retro_mmus_3054, retro_mmus_3272, retro_mmus_3344, retro_mmus_3525, retro_mmus_443, retro_mmus_451, retro_mmus_470, retro_mmus_707,
Pan troglodytes ENSPTRG00000000735 within_species_paralog 3 retrogenes
retro_ptro_1459, retro_ptro_1658, retro_ptro_2489,
Pteropus vampyrus ENSPVAG00000007160 ortholog_one2one 11 retrogenes
retro_pvam_1011, retro_pvam_241, retro_pvam_301, retro_pvam_440, retro_pvam_456, retro_pvam_515, retro_pvam_602, retro_pvam_647, retro_pvam_70, retro_pvam_882, retro_pvam_919,
Sorex araneus ENSSARG00000007736 ortholog_one2one 5 retrogenes
retro_sara_195, retro_sara_279, retro_sara_354, retro_sara_427, retro_sara_74,
Tarsius syrichta ENSTSYG00000001295 ortholog_one2one 7 retrogenes
retro_tsyr_1360, retro_tsyr_1388, retro_tsyr_212, retro_tsyr_707, retro_tsyr_878, retro_tsyr_90, retro_tsyr_954,
Tursiops truncatus ENSTTRG00000007290 ortholog_one2one 2 retrogenes
retro_ttru_1883, retro_ttru_391,
Vicugna pacos ENSVPAG00000009607 ortholog_one2one 2 retrogenes
retro_vpac_185, retro_vpac_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_455 54.27 78.64
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2. retro_ptro_832 76.80 60.68
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3. retro_ptro_959 81.10 79.13
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4. retro_ptro_1470 71.43 65.05
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5. retro_ptro_1599 80.22 85.92
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6. retro_ptro_1675 98.77 79.13
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7. retro_ptro_1912 93.25 79.13
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8. retro_ptro_2006 87.88 79.13
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9. retro_ptro_2413 82.32 79.13
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10. retro_ptro_2494 86.50 79.13
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11. retro_ptro_2697 80.83 58.25
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12. retro_ptro_2896 81.93 79.13
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Download FASTA sequences of all ENSPTRG00000016979 retrocopies