Parental gene:

EEF1A1, ENSEEUG00000000342

Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5553:771..3914(-)


>ENSEEUG00000000342
ATGGGAAAGGAGAAGACCCACATCAACATCGTGGTCATCGGACACGTCGACTCCGGCAAGTCCACCACCACCGGCCACCT
CATCTACAAATGCGGCGGCATCGACAAGAGGACCATCGAGAAGTTCGAGAAGGAGGCGGCCGAGATGGGCAAGGGCTCCT
TCAAGTACGCCTGGGTCTTGGACAAGCTGAAGGCCGAACGCGAACGTGGTATCACCATTGATATCTCCCTGTGGAAATTC
GAGACCAGCAAGTACTACGTGACCATCATCGATGCCCCAGGACACAGAGACTTCATCAAGAACATGATCACAGGCACATC
TCAGGCCGACTGTGCTGTCCTGATTGTGGCTGCTGGTGTCGGTGAGTTTGAAGCCGGTATCTCCAAGAACGGGCAGACCC
GTGAGCACGCCCTTCTGGCTTACACGCTGGGTGTGAAGCAGCTCATTGTTGGTGTCAACAAAATGGATTCCACCGAGCCG
CCCTACAGCCAGAAGAGATACGAGGAAATCGTCAAAGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCCGACAC
AGTAGCCTTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGTTCAAGGGAT
GGAAAATCACCCGGAAAGATGGCAGTGCCAGTGGAACCACACTCCTTGAAGCTNTGGATTGCATTCTGCCAACTCGTACC
GACCTGCGCCTGCCCCAGGACGTGTACAAGATTGGTGGTATTGGTACTGTCCCTGTGGGCCGAGTTGAAACTGGTGTCCT
CAAGCCTGGCATGGTGGTCACATTTGCTCCAGTCAACGTTACAACTGAAGTGAAATCTGTTGAAATGCACCACGAAGCTC
TCAGTGAAGCTCTTCCTGGAGACAACGTGGGCTTCAACGTGAAAAACGTGTCTGTGAAAGATGTTCGTCGTGGCAATGTG
GCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACAGCTCAGGTGATCATTCTGAACCACCCAGGCCA
AATCAGTGCTGGATATGCACCTGTGCTTGATTGTCACACTGCTCACATCGCTTGCAAGTTTGCTGAGCTGAAGGAGAAGA
TTGATCGCCGTTCCGGAAAGAAGCTGGAAGATGGTCCCAAGTTCTTGAAATCTGGTGATGCTGCCATTGTGGACATGGTT
CCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGATTATCCTCCTCTGGGGCGCTTTGCTGTTCGTGACATGAGGCAGAC
AGTCGCTGTAGGTGTCATCAAAGCAGTGGACAAGAAGGCAGCTGGAGCCGGCAAGGTCACCAAGTCTGCCCAGAAGGCAC
AGAAAGCTAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 1707 .16 RPM
SRP017611_kidney 4819 .75 RPM
SRP017611_liver 3570 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007786 possible_ortholog 14 retrogenes
Bos taurus ENSBTAG00000014534 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000012222 possible_ortholog 1 retrogene
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000010051 possible_ortholog 6 retrogenes
Cavia porcellus ENSCPOG00000004067 possible_ortholog 15 retrogenes
Dipodomys ordii ENSDORG00000009629 ortholog_one2one 1 retrogene
Equus caballus ENSECAG00000020363 possible_ortholog 2 retrogenes
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
Echinops telfairi ENSETEG00000004236 possible_ortholog 14 retrogenes
Felis catus ENSFCAG00000030977 possible_ortholog 14 retrogenes
Gorilla gorilla ENSGGOG00000025675 possible_ortholog 20 retrogenes
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000015319 possible_ortholog 21 retrogenes
Myotis lucifugus ENSMLUG00000013537 possible_ortholog 24 retrogenes
Macaca mulatta ENSMMUG00000004852 possible_ortholog 15 retrogenes
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
Mustela putorius furo ENSMPUG00000003816 possible_ortholog 6 retrogenes
Mustela putorius furo ENSMPUG00000004271 possible_ortholog 10 retrogenes
Mus musculus ENSMUSG00000037742 ortholog_one2one 15 retrogenes
Nomascus leucogenys ENSNLEG00000001476 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000008481 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000009152 possible_ortholog 10 retrogenes
Pongo abelii ENSPPYG00000016777 possible_ortholog 1 retrogene
Pan troglodytes ENSPTRG00000018347 possible_ortholog 1 retrogene
Ictidomys tridecemlineatus ENSSTOG00000007687 ortholog_one2one 4 retrogenes
Vicugna pacos ENSVPAG00000007637 possible_ortholog 9 retrogenes
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_407 82.63 86.21
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2. retro_eeur_492 79.86 89.50
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3. retro_eeur_625 87.67 63.46
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Download FASTA sequences of all ENSEEUG00000000342 retrocopies