Parental gene:

EEF1A1, ENSCPOG00000004067

Aliases:None
Description:Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:H0V2B3]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:46683611..46685713(-)


>ENSCPOG00000004067
ATGGGGAAGGAAAAGACTCATATTAATATCGTCGTCATTGGACACGTGGATTCCGGCAAGTCCACCACTACTGGCCATCT
GATCTACAAATGTGGTGGCATCGACAAAAGAACCATTGAGAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGTTCCT
TCAAATATGCCTGGGTCTTGGATAAACTGAAAGCCGAGCGTGAGCGTGGTATCACCATTGACATCTCCCTGTGGAAATTT
GAGACCAGCAAGTACTATGTGACTATCATTGATGCACCTGGACACAGAGACTTTATCAAAAACATGATTACAGGCACATC
CCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTCGAAGCTGGTATCTCCAAGAATGGACAGACCC
GTGAGCATGCCCTTCTGGCTTACACCCTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATACGAGGAAATTGTTAAGGAAGTCAGCACCTACATTAAGAAAATCGGCTACAACCCTGACAC
TGTAGCTTTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGTTGGAGCCAAGTGCTAATATGCCTTGGTTCAAAGGAT
GGAAGGTCACTCGTAAAGATGGCAATGCTAGTGGAACTACACTGCTTGAAGCTTTGGATTGCATCCTTCCACCCACTCGC
CCAACTGACAAGCCTTTGAGGCTGCCCCTCCAGGATGTCTACAAGATTGGTGGTATTGGTACTGTCCCTGTGGGCCGAGT
GGAGACTGGTGTTCTCAAACCTGGCATGGTGGTCACCTTCGCTCCAGTCAATGTGACAACTGAAGTAAAGTCTGTTGAAA
TGCACCATGAAGCTTTGAGTGAAGCTCTTCCAGGAGACAATGTGGGCTTCAACGTCAAGAACGTTTCTGTCAAAGATGTT
CGCCGTGGCAATGTTGCTGGAGACAGCAAAAATGACCCACCGATGGAAGCAGCTGGTTTCACTGCTCAGGTGATTATCCT
GAACCATCCTGGCCAGATCAGTGCTGGCTATGCCCCTGTACTGGATTGTCACACAGCTCACATTGCTTGCAAGTTTGCTG
AGCTGAAAGAAAAGATTGATCGCCGGTCTGGTAAGAAGCTAGAAGATGGGCCCAAATTTTTGAAATCTGGTGATGCTGCC
ATCGTTGACATGGTTCCAGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGATTATCCACCTCTGGGTCGTTTTGCTGTTCG
TGATATGAGACAGACAGTTGCCGTGGGTGTCATCAAAGCAGTGGATAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 855 .04 RPM
SRP017611_kidney 1991 .99 RPM
SRP017611_liver 1852 .07 RPM
SRP040447_lung 3418 .91 RPM
SRP040447_skeletal_muscle 830 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Callithrix jacchus ENSCJAG00000010051 ortholog_one2one 6 retrogenes
retro_cjac_1431, retro_cjac_3075, retro_cjac_34, retro_cjac_3735, retro_cjac_733, retro_cjac_97,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Macaca mulatta ENSMMUG00000004852 ortholog_one2many 15 retrogenes
retro_mmul_1375, retro_mmul_1407, retro_mmul_1518, retro_mmul_1525, retro_mmul_1690, retro_mmul_1707, retro_mmul_1721, retro_mmul_1739, retro_mmul_1743, retro_mmul_1906, retro_mmul_2196, retro_mmul_2250, retro_mmul_323, retro_mmul_6, retro_mmul_848,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Nomascus leucogenys ENSNLEG00000001476 possible_ortholog 6 retrogenes
retro_nleu_1492, retro_nleu_1584, retro_nleu_1754, retro_nleu_1901, retro_nleu_235, retro_nleu_829,
Pan troglodytes ENSPTRG00000018347 ortholog_one2many 1 retrogene
retro_ptro_71,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Vicugna pacos ENSVPAG00000007637 possible_ortholog 9 retrogenes
retro_vpac_369, retro_vpac_404, retro_vpac_510, retro_vpac_511, retro_vpac_523, retro_vpac_544, retro_vpac_582, retro_vpac_592, retro_vpac_606,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_348 96.67 77.92
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2. retro_cpor_381 73.87 79.87
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3. retro_cpor_387 83.27 55.41
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4. retro_cpor_413 53.70 68.61
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5. retro_cpor_709 76.08 89.61
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6. retro_cpor_891 71.88 55.19
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7. retro_cpor_918 70.28 60.61
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8. retro_cpor_959 73.76 77.27
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9. retro_cpor_1150 72.90 79.44
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10. retro_cpor_1162 58.78 51.52
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11. retro_cpor_1191 96.75 100.00
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12. retro_cpor_1256 71.85 57.58
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13. retro_cpor_1393 76.71 90.04
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14. retro_cpor_1492 73.58 51.95
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15. retro_cpor_1499 74.60 53.68
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Download FASTA sequences of all ENSCPOG00000004067 retrocopies