Parental gene:

EEF1AL7, ENSCJAG00000010051

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:71802413..71806353(-)


>ENSCJAG00000010051
ATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCT
AATCTACAAATGCGGTGGCATTGACAAAAGAACCATTGAAAAATTTGAAAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCCGAGCGTGAACGAGGTATCACCATTGATATCTCCTTGTGGAAATTT
GAGACCAGCAAGTACTACGTGACTATCATTGATGCCCCAGGACATAGAGACTTCATCAAAAACATGATTACAGGGACATC
TCAGGCTGACTGTGCTGTCCTGATTGTCGCTGCTGGTGTTGGTGAATTCGAAGCTGGTATCTCCAAGAACGGGCAAACCC
GAGAGCATGCCCTCCTGGCTTACACACTAGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATATGAGGAAATCGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCTGACAC
AGTAGCATTTGTGCCAATTTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGTT
GGAAAGTGACCCGTAAGGATGGCAATGCCAGCGGGACTACACTGCTTGAGGCTCTGGACTGCATCCTACCACCAACGCGT
CCAACTGACAAGCCCTTGCGTCTGCCTCTCCAGGATGTCTATAAAATTGGTGGTATTGGTACTGTTCCTGTTGGTCGAGT
GGAGACTGGTGTTCTCAAACCTGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACTGAAGTGAAATCTGTTGAAA
TGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTT
CGTCGTGGCAACGTTGCTGGTGACAGCAAGAACGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCT
GAACCATCCAGGCCAAATCAGTGCTGGCTATGCCCCTGTACTGGATTGCCACACGGCTCATATTGCATGCAAGTTTGCTG
AGCTGAAGGAAAAGATTGATCGCCGTTCTGGCAAAAAGCTGGAAGATGGCCCTAAGTTCTTGAAGTCTGGTGATGCTGCC
ATCGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTTTCAGACTACCCACCTCTCGGTCGCTTTGCTGTTCG
TGATATGAGACAGACAGTTGCCGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP051959_colon 1829 .24 RPM
SRP051959_heart 1562 .48 RPM
SRP051959_kidney 2044 .86 RPM
SRP051959_liver 2887 .01 RPM
SRP051959_lung 2118 .54 RPM
SRP051959_lymph_node 2452 .64 RPM
SRP051959_skeletal_muscle 749 .17 RPM
SRP051959_spleen 2786 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Cavia porcellus ENSCPOG00000004067 ortholog_one2one 15 retrogenes
retro_cpor_1150, retro_cpor_1162, retro_cpor_1191, retro_cpor_1256, retro_cpor_1393, retro_cpor_1492, retro_cpor_1499, retro_cpor_348, retro_cpor_381, retro_cpor_387, retro_cpor_413, retro_cpor_709, retro_cpor_891, retro_cpor_918, retro_cpor_959,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Macaca mulatta ENSMMUG00000004852 ortholog_one2one 15 retrogenes
retro_mmul_1375, retro_mmul_1407, retro_mmul_1518, retro_mmul_1525, retro_mmul_1690, retro_mmul_1707, retro_mmul_1721, retro_mmul_1739, retro_mmul_1743, retro_mmul_1906, retro_mmul_2196, retro_mmul_2250, retro_mmul_323, retro_mmul_6, retro_mmul_848,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Pan troglodytes ENSPTRG00000018347 ortholog_one2one 1 retrogene
retro_ptro_71,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_34 97.51 78.14
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2. retro_cjac_97 98.48 100.00
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3. retro_cjac_733 73.35 71.86
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4. retro_cjac_1431 82.05 58.87
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5. retro_cjac_3075 86.43 55.84
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6. retro_cjac_3735 64.43 52.81
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Download FASTA sequences of all ENSCJAG00000010051 retrocopies