Parental gene: | LSM3, ENSDNOG00000018032 |
| Aliases: | None |
| Description: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_4972:196326..223358(+) |
>ENSDNOG00000018032
ATGGCGGACGACGTGGACCAGCAACAAACAACCAACACCGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCCTGGATGA
GCGAATTTACGTGAAAATGAGGAACGACCGAGAGCTCCGAGGCAGGTTACATGCTTACGATCAGCATTTAAATATGATTT
TGGGAGATGTGGAAGAAACTGTGACCACGATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCGATGCTTTTTGTGCGAGGCGATGGTGTTGTACTAGTTGCCCCTCCACTGAGAGTTGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 25 .09 RPM |
| SRP012922_cerebellum | 12 .10 RPM |
| SRP012922_heart | 14 .15 RPM |
| SRP012922_kidney | 30 .12 RPM |
| SRP012922_liver | 8 .98 RPM |
| SRP012922_lung | 20 .47 RPM |
| SRP012922_quadricep_muscle | 11 .77 RPM |
| SRP012922_spleen | 21 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009405 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000007363 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016977 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006671 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000016207 | ortholog_one2one | 8 retrogenes | |
| Homo sapiens | ENSG00000170860 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010006 | ortholog_one2many | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000023308 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010677 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000023126 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000034192 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005079 | ortholog_one2one | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011088 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007659 | ortholog_one2one | 6 retrogenes | |
| Oreochromis niloticus | ENSONIG00000000370 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013402 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000014650 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016795 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008733 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000011601 | ortholog_one2many | 6 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006842 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001050 | ortholog_one2one | 11 retrogenes | |
| Tursiops truncatus | ENSTTRG00000011197 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_135 | 81.55 | 99.02 | Please wait, loading  |
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| 2. | retro_dnov_229 | 67.03 | 85.29 | Please wait, loading |
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| 3. | retro_dnov_230 | 68.09 | 88.24 | Please wait, loading |
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| 4. | retro_dnov_1046 | 64.36 | 97.06 | Please wait, loading |
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| 5. | retro_dnov_1728 | 81.37 | 100.00 | Please wait, loading |
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| 6. | retro_dnov_1818 | 77.67 | 100.00 | Please wait, loading |
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| 7. | retro_dnov_2408 | 78.12 | 93.14 | Please wait, loading |
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Download FASTA sequences of all ENSDNOG00000018032 retrocopies