Parental gene:

LSM3, ENSBTAG00000007363

Aliases:None
Description:U6 snRNA-associated Sm-like protein LSm3 [Source:UniProtKB/Swiss-Prot;Acc:Q32PE9]
Organism:Cow (Bos taurus)
Coordinates:22:58693673..58701742(-)


>ENSBTAG00000007363
ATGGCGGACGACGTGGACCAGCAACAAACGACCAACACTGTGGAAGAGCCCTTGGATCTCATCCGGCTCAGCCTGGACGA
GCGCATCTACGTGAAGATGAGGAACGACAGAGAGCTCCGAGGCAGGTTGCATGCTTATGATCAGCATTTAAATATGATAT
TGGGAGATGTGGAAGAAACTGTGACAACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACAAAACGG
AATATTCCGATGCTCTTTGTACGGGGAGACGGTGTTGTGCTAGTTGCCCCGCCACTGAGAGTTGGCTGA

Library Parental gene expression (RPM)
ERP005899_liver 20 .69 RPM
ERP005899_muscle 21 .12 RPM
SRP017611_brain 6 .99 RPM
SRP017611_kidney 14 .82 RPM
SRP017611_liver 9 .29 RPM
SRP030211_testis 40 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016977 ortholog_one2many 1 retrogene
retro_cjac_54,
Cavia porcellus ENSCPOG00000006671 ortholog_one2one 1 retrogene
retro_cpor_1445,
Dasypus novemcinctus ENSDNOG00000018032 ortholog_one2one 7 retrogenes
retro_dnov_1046, retro_dnov_135, retro_dnov_1728, retro_dnov_1818, retro_dnov_229, retro_dnov_230, retro_dnov_2408,
Echinops telfairi ENSETEG00000016207 ortholog_one2one 8 retrogenes
retro_etel_117, retro_etel_1678, retro_etel_1852, retro_etel_2131, retro_etel_472, retro_etel_521, retro_etel_598, retro_etel_833,
Homo sapiens ENSG00000170860 ortholog_one2one 5 retrogenes
retro_hsap_1045, retro_hsap_1654, retro_hsap_1839, retro_hsap_2286, retro_hsap_2986,
Gorilla gorilla ENSGGOG00000010006 ortholog_one2one 4 retrogenes
retro_ggor_104, retro_ggor_1699, retro_ggor_2068, retro_ggor_826,
Loxodonta africana ENSLAFG00000023308 ortholog_one2one 1 retrogene
retro_lafr_1013,
Macaca mulatta ENSMMUG00000023126 ortholog_one2one 5 retrogenes
retro_mmul_1038, retro_mmul_1657, retro_mmul_1908, retro_mmul_554, retro_mmul_828,
Oryctolagus cuniculus ENSOCUG00000011088 possible_ortholog 1 retrogene
retro_ocun_126,
Oreochromis niloticus ENSONIG00000000370 ortholog_one2many 1 retrogene
retro_onil_12,
Pongo abelii ENSPPYG00000013402 ortholog_one2one 4 retrogenes
retro_pabe_1366, retro_pabe_1936, retro_pabe_2475, retro_pabe_874,
Pan troglodytes ENSPTRG00000014650 ortholog_one2one 5 retrogenes
retro_ptro_1125, retro_ptro_1161, retro_ptro_1619, retro_ptro_2020, retro_ptro_712,
Rattus norvegicus ENSRNOG00000008733 ortholog_one2one 1 retrogene
retro_rnor_1187,
Sus scrofa ENSSSCG00000011601 possible_ortholog 6 retrogenes
retro_sscr_1134, retro_sscr_1140, retro_sscr_395, retro_sscr_396, retro_sscr_457, retro_sscr_64,
Tursiops truncatus ENSTTRG00000011197 ortholog_one2one 1 retrogene
retro_ttru_601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1732 71.57 99.02
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Download FASTA sequences of all ENSBTAG00000007363 retrocopies