Parental gene:

ENSCPOG00000015439

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_45:888096..899938(-)


>ENSCPOG00000015439
AAGTCAATGGATAATATGATTTTTGATCCTACTATGCCTTTTATGTTAGATGAAGAAGGGGATGCCCAGACGGAAGAAAC
TCAGCCCTCAGAAACAAAAGAAGTGGAGCCAGAACCAACTGAAGATAAAGATGTGGAAGCTGATGAAGAGGACAGTAGGA
AGAAAGATGCTTCTGATGATCTAGATGACTTGAATTTCTTTAAGATATTTGATATTGATGAAGCAGAAGAAGGTATAAAG
GATCTGAAGATTGATAGTGATATCCAAGAGCCAGCTGAACCAGAGGATGACCTTGATATTATGCTTGGCAATGTCAAGTT
CCCAGATGAGGATGAAATACTAGAAAAAGACGAAGCTTTAGAAGATGAAGACAACAAAAAAGATGATGGTATTTCATTCA
GTAACCAGACAGGCCCTGCTTGGGCAGGCTCAGAGAGAGACTACACATATGAGGAGCTATTGAATAGAGTATTCAACATC
ATGAGGGAAAAGAATCCAGATATGGTAGCAGGAGAGAAAAGAAAATTTGTCATGAAACCTCCACAGGTCGTCCGAGTAGG
AACCAAGAAAACTTCTTTTGTCAACTTTACAGATATCTGTAAACTATTACATCGTCAGCCCAAACATCTTCTTGCATTTT
TATTGGCAGAATTGGGTACAAGTGGTTCTATAGATGGTAATAACCAACTTGTAATCAAAGGCAGATTTCAACAGAAACAG
ATAGAAAATGTCTTAAGAAGATATATCAAGGAATATGTCACTTGTCACACATGCCGATCACCGGACACAATTCTGCAGAA
GGACACCCGGCTCTATTTCTTACAGTGTGAAACTTGTCATTCTCGATGCTCTGTTGCCAGTATCAAAACTGGCTTCCAGG
CTGTCACAGGCAAGCGAGCACAGCTCCGTGCCAAAGCTAACTAG

Library Parental gene expression (RPM)
SRP017611_brain 32 .27 RPM
SRP017611_kidney 53 .18 RPM
SRP017611_liver 49 .05 RPM
SRP040447_lung 47 .31 RPM
SRP040447_skeletal_muscle 86 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007498 ortholog_one2many 1 retrogene
retro_cfam_2070,
Choloepus hoffmanni ENSCHOG00000006521 ortholog_one2many 1 retrogene
retro_chof_271,
Callithrix jacchus ENSCJAG00000018334 possible_ortholog 2 retrogenes
retro_cjac_4196, retro_cjac_697,
Echinops telfairi ENSETEG00000001922 ortholog_many2many 1 retrogene
retro_etel_1101,
Homo sapiens ENSG00000125977 possible_ortholog 3 retrogenes
retro_hsap_2176, retro_hsap_2260, retro_hsap_713,
Gorilla gorilla ENSGGOG00000015546 possible_ortholog 5 retrogenes
retro_ggor_1683, retro_ggor_1726, retro_ggor_2007, retro_ggor_280, retro_ggor_604,
Microcebus murinus ENSMICG00000006944 possible_ortholog 1 retrogene
retro_mmur_1583,
Myotis lucifugus ENSMLUG00000005335 ortholog_one2many 1 retrogene
retro_mluc_604,
Macaca mulatta ENSMMUG00000018095 possible_ortholog 1 retrogene
retro_mmul_1483,
Monodelphis domestica ENSMODG00000002805 ortholog_one2many 5 retrogenes
retro_mdom_1981, retro_mdom_365, retro_mdom_368, retro_mdom_370, retro_mdom_837,
Mus musculus ENSMUSG00000074656 ortholog_one2many 1 retrogene
retro_mmus_3200,
Nomascus leucogenys ENSNLEG00000010034 possible_ortholog 2 retrogenes
retro_nleu_2242, retro_nleu_466,
Otolemur garnettii ENSOGAG00000001417 possible_ortholog 1 retrogene
retro_ogar_196,
Pongo abelii ENSPPYG00000010933 possible_ortholog 2 retrogenes
retro_pabe_1955, retro_pabe_2421,
Pan troglodytes ENSPTRG00000013412 possible_ortholog 2 retrogenes
retro_ptro_1600, retro_ptro_508,
Rattus norvegicus ENSRNOG00000017447 ortholog_many2many 1 retrogene
retro_rnor_2395,
Tupaia belangeri ENSTBEG00000009970 ortholog_one2many 2 retrogenes
retro_tbel_1505, retro_tbel_2508,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1143 88.95 55.70
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Download FASTA sequences of all ENSCPOG00000015439 retrocopies