Parental gene:

ENSCPOG00000009017

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_53:8465154..8467288(-)


>ENSCPOG00000009017
ATGCAGACCACCGGGGCCCTGCGCTTGTCTCCGGCGCTGATCCGCTGTTGTACCCGGGGTCTGATCAGGCCCGCCTCTGC
CTCCTTCCTGAGCCGGCCCCAGGACCCACCTAAATCGCCCTCCAGCAGCGCCCCCCAACTCCAGGTGGCCAGGCGGGACT
TCCAGACCAGCGTTGTCTCCCGGGACATTGACACAGCGGCCAAGTTTATTGGCGCCGGGGCTGCCACGGTTGGCGTGGCT
GGATCTGGGGCTGGCATTGGGACCGTGTTTGGCAGCTTGATCATCGGCTATGCCAGGAACCCGTCTCTCAAGCAGCAGCT
CTTCTCCTATGCCATCCTGGGCTTCGCTCTGTCCGAGGCCATGGGGCTCTTCTGTCTGATGGTCGCTTTCCTCATCCTCT
TCGCCATGTGA

Library Parental gene expression (RPM)
SRP017611_brain 54 .18 RPM
SRP017611_kidney 182 .78 RPM
SRP017611_liver 79 .09 RPM
SRP040447_lung 38 .46 RPM
SRP040447_skeletal_muscle 269 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006341 ortholog_many2many 1 retrogene
retro_acar_9,
Bos taurus ENSBTAG00000018339 ortholog_one2many 3 retrogenes
retro_btau_1506, retro_btau_423, retro_btau_431,
Canis familiaris ENSCAFG00000016880 possible_ortholog 5 retrogenes
retro_cfam_1583, retro_cfam_1621, retro_cfam_1882, retro_cfam_336, retro_cfam_647,
Callithrix jacchus ENSCJAG00000007352 possible_ortholog 7 retrogenes
retro_cjac_1190, retro_cjac_1549, retro_cjac_161, retro_cjac_1878, retro_cjac_289, retro_cjac_4060, retro_cjac_679,
Cavia porcellus ENSCPOG00000006194 within_species_paralog 1 retrogene
retro_cpor_479,
Cavia porcellus ENSCPOG00000022889 within_species_paralog 3 retrogenes
retro_cpor_1495, retro_cpor_268, retro_cpor_492,
Equus caballus ENSECAG00000019908 possible_ortholog 1 retrogene
retro_ecab_463,
Felis catus ENSFCAG00000002344 possible_ortholog 2 retrogenes
retro_fcat_1165, retro_fcat_1346,
Homo sapiens ENSG00000159199 possible_ortholog 8 retrogenes
retro_hsap_1054, retro_hsap_1234, retro_hsap_1397, retro_hsap_1464, retro_hsap_2844, retro_hsap_2882, retro_hsap_597, retro_hsap_686,
Gorilla gorilla ENSGGOG00000001626 possible_ortholog 8 retrogenes
retro_ggor_1083, retro_ggor_1125, retro_ggor_1388, retro_ggor_1998, retro_ggor_528, retro_ggor_589, retro_ggor_831, retro_ggor_967,
Loxodonta africana ENSLAFG00000004537 possible_ortholog 2 retrogenes
retro_lafr_341, retro_lafr_522,
Macropus eugenii ENSMEUG00000005744 ortholog_one2many 2 retrogenes
retro_meug_1650, retro_meug_1973,
Myotis lucifugus ENSMLUG00000011738 possible_ortholog 4 retrogenes
retro_mluc_1276, retro_mluc_1508, retro_mluc_1885, retro_mluc_2498,
Macaca mulatta ENSMMUG00000013395 possible_ortholog 1 retrogene
retro_mmul_173,
Mustela putorius furo ENSMPUG00000015341 possible_ortholog 3 retrogenes
retro_mputfur_1575, retro_mputfur_479, retro_mputfur_497,
Mus musculus ENSMUSG00000006057 possible_ortholog 5 retrogenes
retro_mmus_1523, retro_mmus_1726, retro_mmus_2128, retro_mmus_725, retro_mmus_829,
Nomascus leucogenys ENSNLEG00000002718 possible_ortholog 6 retrogenes
retro_nleu_1082, retro_nleu_1475, retro_nleu_2074, retro_nleu_2219, retro_nleu_623, retro_nleu_777,
Oryctolagus cuniculus ENSOCUG00000016225 ortholog_one2many 2 retrogenes
retro_ocun_346, retro_ocun_375,
Otolemur garnettii ENSOGAG00000011713 ortholog_one2many 3 retrogenes
retro_ogar_1847, retro_ogar_2767, retro_ogar_531,
Pongo abelii ENSPPYG00000008909 possible_ortholog 9 retrogenes
retro_pabe_1027, retro_pabe_1156, retro_pabe_1576, retro_pabe_1607, retro_pabe_2353, retro_pabe_2387, retro_pabe_537, retro_pabe_593, retro_pabe_879,
Pan troglodytes ENSPTRG00000009364 possible_ortholog 8 retrogenes
retro_ptro_1273, retro_ptro_1926, retro_ptro_1950, retro_ptro_440, retro_ptro_491, retro_ptro_718, retro_ptro_847, retro_ptro_960,
Rattus norvegicus ENSRNOG00000007235 possible_ortholog 5 retrogenes
retro_rnor_1342, retro_rnor_2240, retro_rnor_529, retro_rnor_64, retro_rnor_880,
Sus scrofa ENSSSCG00000017544 ortholog_one2many 1 retrogene
retro_sscr_348,
Ictidomys tridecemlineatus ENSSTOG00000013404 possible_ortholog 2 retrogenes
retro_itri_1604, retro_itri_560,
Tupaia belangeri ENSTBEG00000003575 possible_ortholog 5 retrogenes
retro_tbel_2765, retro_tbel_3270, retro_tbel_3540, retro_tbel_387, retro_tbel_4002,
Tursiops truncatus ENSTTRG00000008526 ortholog_one2many 1 retrogene
retro_ttru_279,
Vicugna pacos ENSVPAG00000007653 ortholog_one2many 1 retrogene
retro_vpac_282,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_43 98.53 100.00
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2. retro_cpor_550 71.43 86.76
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Download FASTA sequences of all ENSCPOG00000009017 retrocopies