Parental gene:

DBI, ENSCPOG00000000415

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_3:60137951..60141698(+)


>ENSCPOG00000000415
GCTGAGTTTGAGAAAGCTGCTGAGGAGGTTAAGCACCTCAAGACCCAGCCAACAGACCAAGAGATGTTGTTCATTTATAG
CCACTACAAACAAGCCACCGTGGGCGACATAAATACAGAACGGCCTGGGATGTTGGACCTCAAAGGCAAAGCCAAGTGGG
ATGCCTGGAATCAGCTGAAAGGGACTGCCAAAGAAAGTGCCATGAAAGCTTACGTCGACAAAGTAGAAGAGCTAAAGAAC
AAATACGGAATG

Library Parental gene expression (RPM)
SRP017611_brain 99 .56 RPM
SRP017611_kidney 118 .72 RPM
SRP017611_liver 92 .49 RPM
SRP040447_lung 49 .18 RPM
SRP040447_skeletal_muscle 51 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008509 ortholog_one2one 3 retrogenes
retro_amel_1587, retro_amel_69, retro_amel_993,
Bos taurus ENSBTAG00000009517 ortholog_one2one 2 retrogenes
retro_btau_154, retro_btau_1718,
Canis familiaris ENSCAFG00000004895 ortholog_one2one 6 retrogenes
retro_cfam_1228, retro_cfam_134, retro_cfam_1452, retro_cfam_1599, retro_cfam_570, retro_cfam_857,
Callithrix jacchus ENSCJAG00000021436 ortholog_one2one 1 retrogene
retro_cjac_954,
Equus caballus ENSECAG00000018949 ortholog_one2one 1 retrogene
retro_ecab_14,
Erinaceus europaeus ENSEEUG00000012115 ortholog_one2one 2 retrogenes
retro_eeur_101, retro_eeur_33,
Echinops telfairi ENSETEG00000000220 ortholog_one2one 5 retrogenes
retro_etel_1131, retro_etel_1403, retro_etel_1761, retro_etel_754, retro_etel_849,
Homo sapiens ENSG00000155368 ortholog_one2one 3 retrogenes
retro_hsap_1619, retro_hsap_3345, retro_hsap_3617,
Gorilla gorilla ENSGGOG00000010372 ortholog_one2one 3 retrogenes
retro_ggor_1224, retro_ggor_1289, retro_ggor_2442,
Loxodonta africana ENSLAFG00000005002 ortholog_one2one 2 retrogenes
retro_lafr_280, retro_lafr_42,
Microcebus murinus ENSMICG00000000294 ortholog_one2one 2 retrogenes
retro_mmur_1233, retro_mmur_291,
Macaca mulatta ENSMMUG00000011126 ortholog_one2many 3 retrogenes
retro_mmul_168, retro_mmul_651, retro_mmul_757,
Monodelphis domestica ENSMODG00000000393 possible_ortholog 1 retrogene
retro_mdom_61,
Mustela putorius furo ENSMPUG00000000945 ortholog_one2one 2 retrogenes
retro_mputfur_170, retro_mputfur_438,
Mus musculus ENSMUSG00000026385 ortholog_one2one 2 retrogenes
retro_mmus_2307, retro_mmus_712,
Nomascus leucogenys ENSNLEG00000010290 ortholog_one2one 2 retrogenes
retro_nleu_1170, retro_nleu_807,
Oryctolagus cuniculus ENSOCUG00000004566 ortholog_one2one 1 retrogene
retro_ocun_234,
Ochotona princeps ENSOPRG00000008363 ortholog_one2one 3 retrogenes
retro_opri_125, retro_opri_594, retro_opri_794,
Pongo abelii ENSPPYG00000012788 ortholog_one2one 2 retrogenes
retro_pabe_2755, retro_pabe_2968,
Pan troglodytes ENSPTRG00000012401 ortholog_one2one 2 retrogenes
retro_ptro_2140, retro_ptro_2446,
Pteropus vampyrus ENSPVAG00000014349 ortholog_one2one 5 retrogenes
retro_pvam_1120, retro_pvam_1121, retro_pvam_168, retro_pvam_529, retro_pvam_85,
Rattus norvegicus ENSRNOG00000046889 ortholog_one2one 3 retrogenes
retro_rnor_1801, retro_rnor_2737, retro_rnor_879,
Sus scrofa ENSSSCG00000023435 ortholog_one2one 3 retrogenes
retro_sscr_167, retro_sscr_375, retro_sscr_41,
Ictidomys tridecemlineatus ENSSTOG00000006759 ortholog_one2one 1 retrogene
retro_itri_1,
Tupaia belangeri ENSTBEG00000002067 ortholog_one2one 13 retrogenes
retro_tbel_1617, retro_tbel_2338, retro_tbel_2726, retro_tbel_273, retro_tbel_3096, retro_tbel_3097, retro_tbel_3305, retro_tbel_3392, retro_tbel_3454, retro_tbel_3602, retro_tbel_4015, retro_tbel_556, retro_tbel_579,
Tarsius syrichta ENSTSYG00000002108 ortholog_one2one 2 retrogenes
retro_tsyr_142, retro_tsyr_1654,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_59 55.00 95.24
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2. retro_cpor_576 69.01 82.14
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Download FASTA sequences of all ENSCPOG00000000415 retrocopies