Parental gene:

YY1, ENSCJAG00000016853

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:126131634..126165056(+)


>ENSCJAG00000016853
CCGCCCATGATCGCGCTGCAGCCGCTGGTCACCGACGACCCGACCCAGGTGCACCACCACCAGGAGGTGATCCTGGTGCA
GACGCGCGAGGAGGTGGTGGGCGGCGACGACTCGGACGGGCTGCGCGCCGAGGACGGCTTCGAGGACCAGATCCTCATCC
CGGTGCCCGCGCCGCCGGGCAACAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGACCCTGGAGGGCGAGTTCTCGGTC
ACCATGTGGTCCTCAGATGAAAAAAAAGATATTGACCACGAGACAGTGGTTGAAGAACAGATCATTGGTGAGAACTCACC
TCCTGATTATTCAGAATATATGACGGGAAAAAAACTTCCTCCTGGAGGAATACCTGGCATTGACCTCTCAGATCCCAAAC
AACTGGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAA
GGCTGCACAAAGATGTTCAGGGATAACTCGGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGC
AGAATGTGGCAAAGCTTTTGTTGAGAGTTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGT
GCACGTTCGAAGGCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACCGGAGACAGG
CCCTATGTGTGCCCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACATGC
TAAGGCCAAAAACAACCAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 11 .65 RPM
SRP051959_heart 12 .38 RPM
SRP051959_kidney 13 .29 RPM
SRP051959_liver 10 .94 RPM
SRP051959_lung 13 .86 RPM
SRP051959_lymph_node 13 .58 RPM
SRP051959_skeletal_muscle 8 .58 RPM
SRP051959_spleen 13 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011146 possible_ortholog 1 retrogene
retro_amel_2,
Bos taurus ENSBTAG00000020819 possible_ortholog 1 retrogene
retro_btau_91,
Cavia porcellus ENSCPOG00000020809 possible_ortholog 2 retrogenes
retro_cpor_1220, retro_cpor_1522,
Equus caballus ENSECAG00000005805 possible_ortholog 1 retrogene
retro_ecab_97,
Homo sapiens ENSG00000100811 ortholog_one2many 2 retrogenes
retro_hsap_106, retro_hsap_97,
Gorilla gorilla ENSGGOG00000026332 ortholog_one2many 2 retrogenes
retro_ggor_190, retro_ggor_2,
Mustela putorius furo ENSMPUG00000002931 possible_ortholog 1 retrogene
retro_mputfur_867,
Mus musculus ENSMUSG00000021264 possible_ortholog 1 retrogene
retro_mmus_190,
Nomascus leucogenys ENSNLEG00000000999 ortholog_one2many 3 retrogenes
retro_nleu_1092, retro_nleu_116, retro_nleu_2225,
Oryctolagus cuniculus ENSOCUG00000026938 possible_ortholog 1 retrogene
retro_ocun_1871,
Otolemur garnettii ENSOGAG00000006955 ortholog_one2many 4 retrogenes
retro_ogar_1231, retro_ogar_1804, retro_ogar_1857, retro_ogar_289,
Pongo abelii ENSPPYG00000025949 ortholog_one2many 3 retrogenes
retro_pabe_145, retro_pabe_3616, retro_pabe_534,
Pan troglodytes ENSPTRG00000006717 ortholog_one2many 3 retrogenes
retro_ptro_3093, retro_ptro_45, retro_ptro_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1931 93.49 78.75
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2. retro_cjac_4045 79.43 63.00
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Download FASTA sequences of all ENSCJAG00000016853 retrocopies