Parental gene:

YY1, ENSCPOG00000020809

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_114:4074207..4083831(+)


>ENSCPOG00000020809
GCAGATGAAAAAAAAGATATTGACCATGAGACAGTGGTCGAAGAACAGATCATTGGAGAGAACTCACCTCCTGACTATTC
AGAGTACATGACCGGAAAGAAACTCCCTCCCGGAGGAATCCCGGGCATCGACCTCTCAGATCCTAAACAGCTGGCGGAAT
TTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAAGGCTGCACAAAG
ATGTTCAGGGATAACTCTGCCATGAGAAAACATCTGCACACCCACGGCCCCCGAGTTCACGTCTGTGCAGAGTGTGGCAA
AGCTTTCGTTGAGAGCTCAAAACTAAAGCGACACCAGCTGGTTCATACTGGAGAGAAGCCCTTTCAGTGCACGTTCGAAG
GCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACGCACGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGC
CCCTTCGATGGCTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACACGCTAAGGCCAAAAA
CAACCAG

Library Parental gene expression (RPM)
SRP017611_brain 23 .18 RPM
SRP017611_kidney 29 .21 RPM
SRP017611_liver 20 .76 RPM
SRP040447_lung 29 .74 RPM
SRP040447_skeletal_muscle 15 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011146 ortholog_one2one 1 retrogene
retro_amel_2,
Bos taurus ENSBTAG00000020819 ortholog_one2one 1 retrogene
retro_btau_91,
Callithrix jacchus ENSCJAG00000016853 possible_ortholog 2 retrogenes
retro_cjac_1931, retro_cjac_4045,
Equus caballus ENSECAG00000005805 possible_ortholog 1 retrogene
retro_ecab_97,
Homo sapiens ENSG00000100811 possible_ortholog 2 retrogenes
retro_hsap_106, retro_hsap_97,
Gorilla gorilla ENSGGOG00000026332 possible_ortholog 2 retrogenes
retro_ggor_190, retro_ggor_2,
Mustela putorius furo ENSMPUG00000002931 ortholog_one2one 1 retrogene
retro_mputfur_867,
Mus musculus ENSMUSG00000021264 ortholog_one2one 1 retrogene
retro_mmus_190,
Oryctolagus cuniculus ENSOCUG00000026938 ortholog_one2one 1 retrogene
retro_ocun_1871,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1220 75.13 100.00
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2. retro_cpor_1522 59.82 57.67
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Download FASTA sequences of all ENSCPOG00000020809 retrocopies