Parental gene:

H2AFV, ENSCJAG00000011953

Aliases:None
Description:H2A histone family, member V [Source:HGNC Symbol;Acc:20664]
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:12373530..12388905(-)


>ENSCJAG00000011953
CAAAGCGAGCGGGTATTGGCCGCGGCGGCGAGAGGCGGGCACAGGGTATTGTCCGGCTCCGGCGGCGGCGGTCGGTGCTG
CGAGAGCGGCGGCGGCGGCGCGGGTCGGCAGCGGGAGGGCGCGCGGCCGAGCGGAGGCAGAGTCGGCGCCGAGACCATGG
CTGGAGGCAAAGCTGGAAAGGACAGTGGGAAGGCCAAGGCTAAGGCAGTATCTCGCTCACAGAGAGCTGGGCTACAGTTT
CCTGTGGGCCGCATCCACAGACACTTGAAGACTCGCACCACAAGCCATGGAAGGGTGGGTGCCACTGCTGCCGTGTACAG
TGCTGCGATTCTGGAGTACCTCACTGCTGAGGTACTGGAGCTGGCAGGTAATGCTTCTAAGGATCTCAAAGTAAAGCGTA
TCACTCCGCGTCACTTGCAGCTTGCAATCCGTGGTGATGAAGAGTTGGATTCTCTTATCAAGGCTACCATAGCTGGGGGT
GGTGTGATCCCTCACATCCACAAATCTCTGATTGGAAAGAAGGGACAGCAGAAAACTGCTTAG

Library Parental gene expression (RPM)
SRP051959_colon 13 .80 RPM
SRP051959_heart 9 .89 RPM
SRP051959_kidney 8 .67 RPM
SRP051959_liver 5 .07 RPM
SRP051959_lung 9 .78 RPM
SRP051959_lymph_node 15 .32 RPM
SRP051959_skeletal_muscle 8 .78 RPM
SRP051959_spleen 10 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016975 ortholog_one2one 1 retrogene
retro_btau_686,
Choloepus hoffmanni ENSCHOG00000000889 ortholog_one2one 3 retrogenes
retro_chof_1967, retro_chof_2205, retro_chof_576,
Callithrix jacchus ENSCJAG00000015235 within_species_paralog 1 retrogene
retro_cjac_91,
Cavia porcellus ENSCPOG00000000769 ortholog_one2one 1 retrogene
retro_cpor_37,
Dipodomys ordii ENSDORG00000000793 ortholog_one2one 5 retrogenes
retro_dord_100, retro_dord_12, retro_dord_171, retro_dord_195, retro_dord_291,
Erinaceus europaeus ENSEEUG00000015817 ortholog_one2one 2 retrogenes
retro_eeur_359, retro_eeur_476,
Felis catus ENSFCAG00000010271 ortholog_one2one 2 retrogenes
retro_fcat_373, retro_fcat_617,
Homo sapiens ENSG00000105968 ortholog_one2one 2 retrogenes
retro_hsap_1612, retro_hsap_890,
Myotis lucifugus ENSMLUG00000014500 ortholog_one2many 2 retrogenes
retro_mluc_1492, retro_mluc_2122,
Mus musculus ENSMUSG00000041126 ortholog_one2one 2 retrogenes
retro_mmus_1229, retro_mmus_1481,
Ornithorhynchus anatinus ENSOANG00000009378 ortholog_one2one 2 retrogenes
retro_oana_55, retro_oana_87,
Oryctolagus cuniculus ENSOCUG00000008133 ortholog_one2one 10 retrogenes
retro_ocun_1226, retro_ocun_1336, retro_ocun_1456, retro_ocun_1596, retro_ocun_1938, retro_ocun_385, retro_ocun_389, retro_ocun_523, retro_ocun_601, retro_ocun_778,
Otolemur garnettii ENSOGAG00000025145 ortholog_one2one 1 retrogene
retro_ogar_3181,
Ochotona princeps ENSOPRG00000015604 ortholog_one2one 3 retrogenes
retro_opri_315, retro_opri_538, retro_opri_942,
Pelodiscus sinensis ENSPSIG00000005931 ortholog_one2one 1 retrogene
retro_psin_62,
Pan troglodytes ENSPTRG00000019153 ortholog_one2one 1 retrogene
retro_ptro_1081,
Pteropus vampyrus ENSPVAG00000001109 ortholog_one2one 3 retrogenes
retro_pvam_1284, retro_pvam_165, retro_pvam_213,
Rattus norvegicus ENSRNOG00000007026 ortholog_one2one 5 retrogenes
retro_rnor_1410, retro_rnor_1815, retro_rnor_1935, retro_rnor_2102, retro_rnor_2310,
Sus scrofa ENSSSCG00000016738 ortholog_one2one 1 retrogene
retro_sscr_152,
Ictidomys tridecemlineatus ENSSTOG00000011533 ortholog_one2many 1 retrogene
retro_itri_148,
Tupaia belangeri ENSTBEG00000013840 ortholog_one2one 5 retrogenes
retro_tbel_1155, retro_tbel_1295, retro_tbel_2747, retro_tbel_3214, retro_tbel_970,
Vicugna pacos ENSVPAG00000004507 ortholog_one2one 1 retrogene
retro_vpac_608,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3029 91.60 66.11
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Download FASTA sequences of all ENSCJAG00000011953 retrocopies