Parental gene: | ENSCJAG00000003145 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:77324844..77351341(+) |
>ENSCJAG00000003145
ATGGCGGTGGCAAATTCAAGCCCTGTTAACCCCGTGGTGTTCTTTGATGTCAGCATTGGCGGTCAGGAAGTTGGCCGCAT
GAAGATCGAGCTCTTTGCAGACGTTGTGCCTAAGACGGCCGAGAACTTTAGGCAGTTCTGCACCGGAGAATTCAGAAAAG
ATGGGGTTCCAATAGGATACAAAGGAAGCACCTTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGAGATTTTGTT
AATGGAGATGGTACTGGAGTCGCCAGTATTTACCGGGGGCCATTTGCAGATGAAAATTTTAAACTTAGACACTCAGCTCC
AGGCCTGCTTTCTATGGCAAACAGTGGTCCCAGTACAAATGGCTGTCAGTTCTTTATCACCTGCTCTAAGTGCGACTGGT
TGGATGGGAAGCATGTGGTGTTTGGAAAAATCATCGATGGACTTCTGGTGATGAGAAAGATTGAGAATGTTCCCACAGGC
CCCAACAATAAGCCCAAGCTACCTGTGGTGATCTCACAGTGTGGGGAGATGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 5 .77 RPM |
| SRP051959_heart | 4 .74 RPM |
| SRP051959_kidney | 6 .72 RPM |
| SRP051959_liver | 6 .19 RPM |
| SRP051959_lung | 7 .30 RPM |
| SRP051959_lymph_node | 8 .79 RPM |
| SRP051959_skeletal_muscle | 2 .64 RPM |
| SRP051959_spleen | 6 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000000526 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000004590 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016094 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019613 | other_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008214 | ortholog_one2many | 8 retrogenes | |
| Dipodomys ordii | ENSDORG00000016152 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000171960 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022507 | ortholog_one2many | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000001691 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000025400 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000013129 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013966 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000060288 | possible_ortholog | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012313 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011453 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014937 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000011139 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001467 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000614 | ortholog_one2many | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005500 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008489 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000115 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000003182 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_129 | 97.74 | 100.00 | Please wait, loading  |
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| 2. | retro_cjac_1886 | 99.44 | 100.00 | Please wait, loading |
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| 3. | retro_cjac_2205 | 97.35 | 63.84 | Please wait, loading |
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| 4. | retro_cjac_3120 | 98.31 | 100.00 | Please wait, loading |
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| 5. | retro_cjac_4110 | 74.83 | 79.66 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000003145 retrocopies