Parental gene:

ENSCING00000006860

Aliases:None
Description:None
Organism:Vase tunicate (Ciona intestinalis)
Coordinates:9:3765701..3768972(-)


>ENSCING00000006860
ATGTCCGCAACCACATCGCAACAACGGGCTACAGAGGAAAGTTTCAGCAGCGAACCAAATAATGAAACTCCAGGGCCAAG
TTCGCAAGTCGTTGAGCAAAAAGACGAAACCACGGAAGCTAAGAACAATGAATCTGCTCCCAGCACGCAGTCACCGGAAA
CTAAACTGGTCAAACACAACCTGAAAAATGGAAGTAGCGATACATCAAAATCAGAACGCGAAAAAAAGCTGAAACTTGAC
CGTGAGAAGCGAGCCAGGGAGATGGCTTCAGCTTCAAAAGTCTGGTTGTCTAAGTCACCAAGAGGTCTTTCATCAAGTGC
AAAGAGGTTGCAGAAAGAACTGGCTGATATTACATTGGATCCTCCACCAAACTGCAGTGCTGGGCCAAAAGGAGACAACT
TGTACGAGTGGGTTTCAACCATTTTAGGACCTCCTGGCTCTGTATATGAGGGTGGGATCTTTTTTCTTGACATTCATTTC
ACCCAGGAGTACCCATTTAAGCCTCCCAAAGTTACGTTCCGTACTCGCATCTATCACTGTAATATCAACAGCCAGGGAGT
AATTTGCTTAGATGTGCTGAAAGATAATTGGAGTCCAGCACTAACAGTTTCAAAGGTCCTGCTATCAGTTTGCTCTTTAC
TTTCAGACTGCAACCCAGCTGATCCGTTAGTTGCAAACATTGCCACTCAGTATTTCACCAACCGCGAGGAACATGACAGA
ATATCACGGCAGTGGACACAGAAATATGCCACGTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003515 ortholog_one2many 2 retrogenes
retro_amel_1117, retro_amel_483,
Canis familiaris ENSCAFG00000014163 ortholog_one2many 3 retrogenes
retro_cfam_2076, retro_cfam_2161, retro_cfam_27,
Choloepus hoffmanni ENSCHOG00000007325 ortholog_one2many 3 retrogenes
retro_chof_1756, retro_chof_2077, retro_chof_2358,
Choloepus hoffmanni ENSCHOG00000010341 ortholog_one2many 2 retrogenes
retro_chof_1304, retro_chof_674,
Ciona intestinalis ENSCING00000018711 other_paralog 2 retrogenes
retro_cint_19, retro_cint_29,
Callithrix jacchus ENSCJAG00000011559 ortholog_one2many 3 retrogenes
retro_cjac_3194, retro_cjac_3911, retro_cjac_3967,
Cavia porcellus ENSCPOG00000002251 ortholog_one2many 2 retrogenes
retro_cpor_1036, retro_cpor_52,
Dasypus novemcinctus ENSDNOG00000005448 ortholog_one2one 7 retrogenes
retro_dnov_1217, retro_dnov_1281, retro_dnov_1360, retro_dnov_156, retro_dnov_2026, retro_dnov_2508, retro_dnov_424,
Dipodomys ordii ENSDORG00000015441 ortholog_one2many 1 retrogene
retro_dord_785,
Equus caballus ENSECAG00000007233 ortholog_one2many 1 retrogene
retro_ecab_196,
Echinops telfairi ENSETEG00000019324 ortholog_one2many 2 retrogenes
retro_etel_314, retro_etel_848,
Felis catus ENSFCAG00000007748 ortholog_one2many 2 retrogenes
retro_fcat_1582, retro_fcat_913,
Felis catus ENSFCAG00000024719 ortholog_one2many 1 retrogene
retro_fcat_623,
Homo sapiens ENSG00000170035 ortholog_one2many 1 retrogene
retro_hsap_4653,
Gorilla gorilla ENSGGOG00000008393 ortholog_one2many 1 retrogene
retro_ggor_76,
Loxodonta africana ENSLAFG00000004150 ortholog_one2many 1 retrogene
retro_lafr_320,
Macropus eugenii ENSMEUG00000014517 ortholog_one2many 1 retrogene
retro_meug_2089,
Microcebus murinus ENSMICG00000016799 ortholog_one2many 3 retrogenes
retro_mmur_1075, retro_mmur_15, retro_mmur_419,
Myotis lucifugus ENSMLUG00000025144 ortholog_one2many 1 retrogene
retro_mluc_712,
Macaca mulatta ENSMMUG00000008069 ortholog_one2many 2 retrogenes
retro_mmul_1382, retro_mmul_1834,
Monodelphis domestica ENSMODG00000010301 ortholog_one2many 2 retrogenes
retro_mdom_1679, retro_mdom_1688,
Mus musculus ENSMUSG00000021774 ortholog_one2many 3 retrogenes
retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Mus musculus ENSMUSG00000027011 ortholog_one2many 4 retrogenes
retro_mmus_2814, retro_mmus_3123, retro_mmus_3416, retro_mmus_3571,
Nomascus leucogenys ENSNLEG00000006290 ortholog_one2many 1 retrogene
retro_nleu_2068,
Oryctolagus cuniculus ENSOCUG00000006026 ortholog_one2many 2 retrogenes
retro_ocun_134, retro_ocun_243,
Otolemur garnettii ENSOGAG00000007527 ortholog_one2many 3 retrogenes
retro_ogar_2029, retro_ogar_2566, retro_ogar_626,
Otolemur garnettii ENSOGAG00000014956 ortholog_one2many 4 retrogenes
retro_ogar_1343, retro_ogar_2512, retro_ogar_2682, retro_ogar_3443,
Ochotona princeps ENSOPRG00000010615 ortholog_one2many 2 retrogenes
retro_opri_329, retro_opri_788,
Pongo abelii ENSPPYG00000012987 ortholog_one2many 1 retrogene
retro_pabe_3614,
Pan troglodytes ENSPTRG00000014693 ortholog_one2many 1 retrogene
retro_ptro_68,
Pteropus vampyrus ENSPVAG00000001773 ortholog_one2many 1 retrogene
retro_pvam_1451,
Rattus norvegicus ENSRNOG00000004544 ortholog_one2many 1 retrogene
retro_rnor_1236,
Rattus norvegicus ENSRNOG00000008794 ortholog_one2many 3 retrogenes
retro_rnor_1632, retro_rnor_2291, retro_rnor_2343,
Sarcophilus harrisii ENSSHAG00000001416 ortholog_one2many 1 retrogene
retro_shar_712,
Sus scrofa ENSSSCG00000011209 ortholog_one2many 2 retrogenes
retro_sscr_759, retro_sscr_961,
Ictidomys tridecemlineatus ENSSTOG00000025799 ortholog_one2many 2 retrogenes
retro_itri_1371, retro_itri_645,
Tupaia belangeri ENSTBEG00000009932 ortholog_one2many 2 retrogenes
retro_tbel_1986, retro_tbel_3294,
Tarsius syrichta ENSTSYG00000002281 ortholog_one2many 5 retrogenes
retro_tsyr_1393, retro_tsyr_1809, retro_tsyr_1842, retro_tsyr_1942, retro_tsyr_457,
Tursiops truncatus ENSTTRG00000001361 ortholog_one2many 1 retrogene
retro_ttru_1056,
Tursiops truncatus ENSTTRG00000005156 ortholog_one2many 1 retrogene
retro_ttru_1075,
Vicugna pacos ENSVPAG00000007007 ortholog_one2many 3 retrogenes
retro_vpac_108, retro_vpac_315, retro_vpac_425,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cint_33 92.74 98.01
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Download FASTA sequences of all ENSCING00000006860 retrocopies