RetrogeneDB ID: retro_mluc_712

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:10662682..10663113(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2E2
• Ensembl ID: ENSMLUG00000025144
• Aliases: None
• Description: None

Sequence

>retro_mluc_712
AGTAAGAGGATTCGGAAGGAACTGGCAGATTCCACTTTAGATCCGCCAGCTAACTGCAGTGCTAGTCCAAAGGCGATAAC
ATCTATGAATGGAGATCAACCATCCTGGAGCCGCCAGCATCCGTGTATGAGGGTGGTGTATTCTTCCTCGATACCACTTT
TACACCGGAGCACCCCTTCAATCTTCCAAAGGTTACATTTCAGACAAGAATCTATCACTGGAATAACAGTCAAGGAGTTA
TTGGCTTGGACATACTGAAAGATAATTGGAGTCCAGCACTAAGCATTTCTAAAGCTCTCCATTCTACCTGCTCACTTCTT
ACAGACTGTAATCCTGCCGATCTCTAGGTGAGAAGTATTGCCACTCAGTATATGATCAACAGAGCAGAACATGACAGAAT
GGCCGAACAGTGGACCAAGAGATACGCTACA

Alignment

ORF - retro_mluc_712 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.82 %
• Parental protein coverage: 72.14 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AKRIQKELAEITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRT
          .KRI.KELA..TLDPP.NCSA.PK.GDNIYEWRSTIL.PP.SVYEGGVFFLD.TF.P..PF..PKVTF.T
Retrocopy SKRIRKELADSTLDPPANCSASPK<GDNIYEWRSTILEPPASVYEGGVFFLDTTFTPEHPFNLPKVTFQT

Parental  RIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQW
          RIYH.N.NSQGVI.LDILKDNWSPAL.ISK.L.S.CSLLTDCNPAD..V.SIATQYM.NRAEHDRMA.QW
Retrocopy RIYHWN-NSQGVIGLDILKDNWSPALSISKALHSTCSLLTDCNPADL*VRSIATQYMINRAEHDRMAEQW

Parental  TKRYAT
          TKRYAT
Retrocopy TKRYAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_712 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 39 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010341	2 retrocopies	retro_chof_1304, retro_chof_674,
Ciona intestinalis	ENSCING00000006860	1 retrocopy	retro_cint_33,
Dasypus novemcinctus	ENSDNOG00000005448	7 retrocopies	retro_dnov_1217, retro_dnov_1281, retro_dnov_1360, retro_dnov_156, retro_dnov_2026, retro_dnov_2508, retro_dnov_424,
Felis catus	ENSFCAG00000007748	2 retrocopies	retro_fcat_1582, retro_fcat_913,
Microcebus murinus	ENSMICG00000016799	3 retrocopies	retro_mmur_1075, retro_mmur_15, retro_mmur_419,
Myotis lucifugus	ENSMLUG00000001547	1 retrocopy	retro_mluc_32,
Myotis lucifugus	ENSMLUG00000005710	13 retrocopies	retro_mluc_1019, retro_mluc_1597, retro_mluc_1855, retro_mluc_1914, retro_mluc_1971, retro_mluc_2053, retro_mluc_650, retro_mluc_687, retro_mluc_703, retro_mluc_778, retro_mluc_803, retro_mluc_867, retro_mluc_878,
Myotis lucifugus	ENSMLUG00000011919	3 retrocopies	retro_mluc_1826, retro_mluc_1827, retro_mluc_594,
Myotis lucifugus	ENSMLUG00000025144	1 retrocopy	retro_mluc_712 ,
Ochotona princeps	ENSOPRG00000010615	2 retrocopies	retro_opri_329, retro_opri_788,
Tursiops truncatus	ENSTTRG00000005156	1 retrocopy	retro_ttru_1075,
Vicugna pacos	ENSVPAG00000007007	3 retrocopies	retro_vpac_108, retro_vpac_315, retro_vpac_425,