RetrogeneDB - Parental gene ENSBTAG00000006795 details

                            
>ENSBTAG00000006795
ATGGCGCTGCGCGCGGTGCGGAGCGTGCGGGCCGCGGTCGGCGGCCTGCGCGCCATCTCGGCACCCAGCGCGCCCTGCTT

GCCGCGGCCCTGGGGACTGCGAGCGGGTGCAGTCCGGGAGCTGCGCACCGGCCCTGCTCTGCTGTCGGTGCGGAAATTCA

CAGAAAAACACGAATGGGTAACAACAGAAAATGGTGTCGGAACAGTGGGAATCAGCAATTTTGCACAGGAAGCTTTGGGA

GATGTTGTTTACTGTAGTCTGCCTGAAGTTGGGACAAAGTTGAACAAACAAGAGGAGTTTGGTGCTTTGGAAAGTGTGAA

AGCTGCTAGTGAACTCTATTCTCCTCTATCAGGAGAAGTAACTGAAATTAATAAAGCTCTAGCAGAAAATCCAGGACTTG

TCAACAAGTCTTGTTACGAAGACGGTTGGCTGATCAAGATGACATTCAGTAACCCTTCAGAACTAGATGAACTAATGAGT

GAAGAAGCATATGAGAAATACATAAAATCTATTGAGGAGTGA

Library	Parental gene expression (RPM)
ERP005899_liver	25 .74 RPM
ERP005899_muscle	12 .77 RPM
SRP017611_brain	4 .57 RPM
SRP017611_kidney	6 .99 RPM
SRP017611_liver	5 .74 RPM
SRP030211_testis	12 .52 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000008905	ortholog_one2many	1 retrogene	retro_acar_75,
Ailuropoda melanoleuca	ENSAMEG00000013959	ortholog_one2many	5 retrogenes	retro_amel_1362, retro_amel_1877, retro_amel_229, retro_amel_432, retro_amel_80,
Canis familiaris	ENSCAFG00000020014	ortholog_one2many	5 retrogenes	retro_cfam_1249, retro_cfam_1543, retro_cfam_358, retro_cfam_618, retro_cfam_732,
Choloepus hoffmanni	ENSCHOG00000002434	ortholog_one2many	37 retrogenes	retro_chof_1011, retro_chof_1019, retro_chof_1123, retro_chof_1213, retro_chof_1324, retro_chof_1410, retro_chof_1482, retro_chof_1550, retro_chof_163, retro_chof_1647, retro_chof_1659, retro_chof_1690, retro_chof_1705, retro_chof_1722, retro_chof_178, retro_chof_1781, retro_chof_1787, retro_chof_219, retro_chof_2264, retro_chof_2289, retro_chof_2319, retro_chof_2412, retro_chof_2466, retro_chof_2494, retro_chof_2632, retro_chof_2657, retro_chof_283, retro_chof_335, retro_chof_361, retro_chof_362, retro_chof_363, retro_chof_419, retro_chof_433, retro_chof_477, retro_chof_597, retro_chof_755, retro_chof_931,
Callithrix jacchus	ENSCJAG00000016654	possible_ortholog	8 retrogenes	retro_cjac_1071, retro_cjac_1576, retro_cjac_1674, retro_cjac_1804, retro_cjac_2650, retro_cjac_3280, retro_cjac_3470, retro_cjac_552,
Cavia porcellus	ENSCPOG00000009983	possible_ortholog	3 retrogenes	retro_cpor_1240, retro_cpor_385, retro_cpor_463,
Dipodomys ordii	ENSDORG00000007831	possible_ortholog	1 retrogene	retro_dord_645,
Erinaceus europaeus	ENSEEUG00000009653	ortholog_one2many	2 retrogenes	retro_eeur_189, retro_eeur_231,
Felis catus	ENSFCAG00000013038	ortholog_many2many	8 retrogenes	retro_fcat_1007, retro_fcat_1112, retro_fcat_1294, retro_fcat_1435, retro_fcat_1627, retro_fcat_1920, retro_fcat_215, retro_fcat_354,
Homo sapiens	ENSG00000140905	ortholog_one2many	10 retrogenes	retro_hsap_1079, retro_hsap_1380, retro_hsap_2376, retro_hsap_275, retro_hsap_3308, retro_hsap_3389, retro_hsap_3742, retro_hsap_3837, retro_hsap_4125, retro_hsap_465,
Gorilla gorilla	ENSGGOG00000000232	ortholog_one2many	10 retrogenes	retro_ggor_1073, retro_ggor_1306, retro_ggor_1459, retro_ggor_1742, retro_ggor_1802, retro_ggor_2295, retro_ggor_2584, retro_ggor_2772, retro_ggor_320, retro_ggor_853,
Loxodonta africana	ENSLAFG00000015586	ortholog_one2many	3 retrogenes	retro_lafr_554, retro_lafr_822, retro_lafr_900,
Myotis lucifugus	ENSMLUG00000005783	ortholog_one2many	12 retrogenes	retro_mluc_1151, retro_mluc_1221, retro_mluc_1466, retro_mluc_1538, retro_mluc_1659, retro_mluc_1685, retro_mluc_2089, retro_mluc_2090, retro_mluc_2139, retro_mluc_2314, retro_mluc_2411, retro_mluc_709,
Macaca mulatta	ENSMMUG00000013088	possible_ortholog	5 retrogenes	retro_mmul_1192, retro_mmul_2202, retro_mmul_661, retro_mmul_840, retro_mmul_960,
Mustela putorius furo	ENSMPUG00000009677	ortholog_one2many	4 retrogenes	retro_mputfur_1434, retro_mputfur_1492, retro_mputfur_349, retro_mputfur_809,
Mus musculus	ENSMUSG00000034424	possible_ortholog	8 retrogenes	retro_mmus_1880, retro_mmus_2144, retro_mmus_2235, retro_mmus_3062, retro_mmus_3303, retro_mmus_3459, retro_mmus_3610, retro_mmus_3703,
Nomascus leucogenys	ENSNLEG00000026844	possible_ortholog	1 retrogene	retro_nleu_365,
Ochotona princeps	ENSOPRG00000003281	possible_ortholog	1 retrogene	retro_opri_790,
Procavia capensis	ENSPCAG00000005820	ortholog_one2many	1 retrogene	retro_pcap_207,
Pongo abelii	ENSPPYG00000007585	ortholog_one2many	15 retrogenes	retro_pabe_1146, retro_pabe_1147, retro_pabe_2146, retro_pabe_2728, retro_pabe_2785, retro_pabe_3060, retro_pabe_3121, retro_pabe_3288, retro_pabe_3289, retro_pabe_3479, retro_pabe_392, retro_pabe_393, retro_pabe_675, retro_pabe_676, retro_pabe_899,
Pan troglodytes	ENSPTRG00000008386	ortholog_one2many	10 retrogenes	retro_ptro_1738, retro_ptro_2163, retro_ptro_230, retro_ptro_2304, retro_ptro_2381, retro_ptro_2540, retro_ptro_2613, retro_ptro_2802, retro_ptro_2803, retro_ptro_734,
Pteropus vampyrus	ENSPVAG00000009956	possible_ortholog	8 retrogenes	retro_pvam_1253, retro_pvam_1474, retro_pvam_1481, retro_pvam_194, retro_pvam_552, retro_pvam_583, retro_pvam_78, retro_pvam_958,
Rattus norvegicus	ENSRNOG00000011535	possible_ortholog	6 retrogenes	retro_rnor_1217, retro_rnor_1218, retro_rnor_1400, retro_rnor_1910, retro_rnor_2691, retro_rnor_557,
Sarcophilus harrisii	ENSSHAG00000005529	ortholog_one2many	1 retrogene	retro_shar_239,
Ictidomys tridecemlineatus	ENSSTOG00000016433	possible_ortholog	2 retrogenes	retro_itri_31, retro_itri_34,
Tupaia belangeri	ENSTBEG00000000056	possible_ortholog	27 retrogenes	retro_tbel_1426, retro_tbel_1716, retro_tbel_1766, retro_tbel_1846, retro_tbel_1923, retro_tbel_2026, retro_tbel_2074, retro_tbel_2168, retro_tbel_2315, retro_tbel_2426, retro_tbel_2489, retro_tbel_2515, retro_tbel_2573, retro_tbel_2769, retro_tbel_3007, retro_tbel_3025, retro_tbel_311, retro_tbel_3140, retro_tbel_3458, retro_tbel_3852, retro_tbel_3924, retro_tbel_4173, retro_tbel_4727, retro_tbel_597, retro_tbel_601, retro_tbel_609, retro_tbel_825,
Tarsius syrichta	ENSTSYG00000000248	possible_ortholog	13 retrogenes	retro_tsyr_119, retro_tsyr_1311, retro_tsyr_1367, retro_tsyr_1833, retro_tsyr_2023, retro_tsyr_2173, retro_tsyr_309, retro_tsyr_328, retro_tsyr_363, retro_tsyr_429, retro_tsyr_439, retro_tsyr_587, retro_tsyr_643,
Tursiops truncatus	ENSTTRG00000007992	ortholog_one2many	8 retrogenes	retro_ttru_1052, retro_ttru_128, retro_ttru_1415, retro_ttru_1458, retro_ttru_1778, retro_ttru_211, retro_ttru_310, retro_ttru_795,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_btau_12	93.06	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_btau_94	92.16	88.44	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_btau_246	97.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_btau_265	94.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_btau_1128	95.89	84.39	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_btau_1483	100.00	94.80	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_btau_1543	74.24	74.57	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_btau_1628	90.30	76.88	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSBTAG00000006795 retrocopies

Parental gene:	GCSH, ENSBTAG00000006795
Aliases:	None
Description:	Glycine cleavage system H protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20821]
Organism:	*Cow (Bos taurus)*
Coordinates:	18:7793105..7805806(-)

Parental gene:

GCSH, ENSBTAG00000006795