Parental gene:

GCSH, ENSCJAG00000016654

Aliases:None
Description:glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208]
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:35208470..35222856(-)


>ENSCJAG00000016654
ATGGCGCTGCGAGCGGCGCGGAGCGTGCGGGCCGTACTCTGCACCCTGCGCGCGGTCCCGTCACCCGCCGCGTCCTGCCC
CCCGAGGCCCTGGCAGCTGGGGGCGGGCGCCGTCCGGAAGCTGCGCACGGGACCCGCTCTGCTTTCGGTGCGTAAATTCA
CAGAGAAACATGAATGGATAACAACAGAAAATGGTATTGGAACAGTGGGAATCAGCAATTTTGCACAGGAAGCGTTGGGA
GATGTTGTTTACTGTAGTCTGCCTGAAGTTGGGACAAAATTGAATAAACAAGATGAATTTGGTGCTTTGGAAAGTGTGAA
AGCTGCTAGTGAACTTTATTCTCCTTTGTCAGGAGAAGTAACAGAAATTAATGAAGCTCTTGCAGAAAATCCAGGACTTG
TAAACAAATCTTGTTATGAAGATGGTTGGCTGATCAAGATGACACTGAGTAACCCTTCAGAACTAGATGAACTTATGAGT
GAAGAAGCGTATGAGAAATATATAAAGTCTATTGAGGAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 3 .39 RPM
SRP051959_heart 7 .47 RPM
SRP051959_kidney 11 .83 RPM
SRP051959_liver 34 .98 RPM
SRP051959_lung 1 .92 RPM
SRP051959_lymph_node 1 .42 RPM
SRP051959_skeletal_muscle 6 .66 RPM
SRP051959_spleen 1 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008905 ortholog_one2one 1 retrogene
retro_acar_75,
Ailuropoda melanoleuca ENSAMEG00000013959 ortholog_one2one 5 retrogenes
retro_amel_1362, retro_amel_1877, retro_amel_229, retro_amel_432, retro_amel_80,
Bos taurus ENSBTAG00000006795 possible_ortholog 8 retrogenes
retro_btau_1128, retro_btau_12, retro_btau_1483, retro_btau_1543, retro_btau_1628, retro_btau_246, retro_btau_265, retro_btau_94,
Canis familiaris ENSCAFG00000020014 ortholog_one2one 5 retrogenes
retro_cfam_1249, retro_cfam_1543, retro_cfam_358, retro_cfam_618, retro_cfam_732,
Choloepus hoffmanni ENSCHOG00000002434 ortholog_one2one 37 retrogenes
retro_chof_1011, retro_chof_1019, retro_chof_1123, retro_chof_1213, retro_chof_1324, retro_chof_1410, retro_chof_1482, retro_chof_1550, retro_chof_163, retro_chof_1647, retro_chof_1659, retro_chof_1690, retro_chof_1705, retro_chof_1722, retro_chof_178, retro_chof_1781, retro_chof_1787, retro_chof_219, retro_chof_2264, retro_chof_2289, retro_chof_2319, retro_chof_2412, retro_chof_2466, retro_chof_2494, retro_chof_2632, retro_chof_2657, retro_chof_283, retro_chof_335, retro_chof_361, retro_chof_362, retro_chof_363, retro_chof_419, retro_chof_433, retro_chof_477, retro_chof_597, retro_chof_755, retro_chof_931,
Felis catus ENSFCAG00000013038 ortholog_one2many 8 retrogenes
retro_fcat_1007, retro_fcat_1112, retro_fcat_1294, retro_fcat_1435, retro_fcat_1627, retro_fcat_1920, retro_fcat_215, retro_fcat_354,
Loxodonta africana ENSLAFG00000015586 ortholog_one2one 3 retrogenes
retro_lafr_554, retro_lafr_822, retro_lafr_900,
Myotis lucifugus ENSMLUG00000005783 ortholog_one2one 12 retrogenes
retro_mluc_1151, retro_mluc_1221, retro_mluc_1466, retro_mluc_1538, retro_mluc_1659, retro_mluc_1685, retro_mluc_2089, retro_mluc_2090, retro_mluc_2139, retro_mluc_2314, retro_mluc_2411, retro_mluc_709,
Macaca mulatta ENSMMUG00000013088 possible_ortholog 5 retrogenes
retro_mmul_1192, retro_mmul_2202, retro_mmul_661, retro_mmul_840, retro_mmul_960,
Mustela putorius furo ENSMPUG00000009677 ortholog_one2one 4 retrogenes
retro_mputfur_1434, retro_mputfur_1492, retro_mputfur_349, retro_mputfur_809,
Nomascus leucogenys ENSNLEG00000026844 possible_ortholog 1 retrogene
retro_nleu_365,
Ochotona princeps ENSOPRG00000003281 ortholog_one2one 1 retrogene
retro_opri_790,
Procavia capensis ENSPCAG00000005820 ortholog_one2one 1 retrogene
retro_pcap_207,
Pteropus vampyrus ENSPVAG00000009956 ortholog_one2one 8 retrogenes
retro_pvam_1253, retro_pvam_1474, retro_pvam_1481, retro_pvam_194, retro_pvam_552, retro_pvam_583, retro_pvam_78, retro_pvam_958,
Sarcophilus harrisii ENSSHAG00000005529 ortholog_one2one 1 retrogene
retro_shar_239,
Ictidomys tridecemlineatus ENSSTOG00000016433 possible_ortholog 2 retrogenes
retro_itri_31, retro_itri_34,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_552 89.66 100.00
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2. retro_cjac_1071 90.75 100.00
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3. retro_cjac_1576 71.57 58.38
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4. retro_cjac_1674 62.22 51.45
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5. retro_cjac_1804 90.13 87.28
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6. retro_cjac_2650 80.12 95.95
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7. retro_cjac_3280 69.40 76.88
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8. retro_cjac_3470 94.83 100.00
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Download FASTA sequences of all ENSCJAG00000016654 retrocopies