Parental gene:

GCSH, ENSPTRG00000008386

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:80611908..80626701(-)


>ENSPTRG00000008386
ATGGCGCTGCGAGTGGTGCGGAGCGTGCGGGCCCTTCTCTGCACCCTGCGCGGGGTCCCGTCACCCGCCTCGCCCTGCCC
GCCGAGGCCCTGGCAGCTGGGGGTGGGCGCCGTCCGTACGCTGCGCACTGGACCCGCTCTGCTCTCGGTGCGTAAATTCA
CAGAGAAACACGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAGGAAGCGTTGGGA
GATGTTGTTTACTGTAGTCTGCCTGAAGTTGGGACAAAATTGAACAAACAAGATGAGTTTGGTGCTTTGGAAAGTGTGAA
AGCTGCTAGTGAACTCTATTCTCCTTTATCAGGAGAAGTAACTGAAATTAATGAAGCTCTTGCAGAAAATCCAGGACTTG
TAAACAAATCTTGTTATGAAGATGGTTGGCTGATCAAGATGACACTGAGTAACCCTTCAGAACTAGATGAACTTATGAGT
GAAGAAGCGTATGAGAAATACATAAAATCTATTGAGGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .24 RPM
SRP007412_cerebellum 3 .23 RPM
SRP007412_heart 5 .19 RPM
SRP007412_kidney 10 .30 RPM
SRP007412_liver 12 .77 RPM
SRP007412_testis 2 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008905 ortholog_one2one 1 retrogene
retro_acar_75,
Ailuropoda melanoleuca ENSAMEG00000013959 ortholog_one2one 5 retrogenes
retro_amel_1362, retro_amel_1877, retro_amel_229, retro_amel_432, retro_amel_80,
Bos taurus ENSBTAG00000006795 ortholog_one2many 8 retrogenes
retro_btau_1128, retro_btau_12, retro_btau_1483, retro_btau_1543, retro_btau_1628, retro_btau_246, retro_btau_265, retro_btau_94,
Canis familiaris ENSCAFG00000020014 ortholog_one2one 5 retrogenes
retro_cfam_1249, retro_cfam_1543, retro_cfam_358, retro_cfam_618, retro_cfam_732,
Choloepus hoffmanni ENSCHOG00000002434 ortholog_one2one 37 retrogenes
retro_chof_1011, retro_chof_1019, retro_chof_1123, retro_chof_1213, retro_chof_1324, retro_chof_1410, retro_chof_1482, retro_chof_1550, retro_chof_163, retro_chof_1647, retro_chof_1659, retro_chof_1690, retro_chof_1705, retro_chof_1722, retro_chof_178, retro_chof_1781, retro_chof_1787, retro_chof_219, retro_chof_2264, retro_chof_2289, retro_chof_2319, retro_chof_2412, retro_chof_2466, retro_chof_2494, retro_chof_2632, retro_chof_2657, retro_chof_283, retro_chof_335, retro_chof_361, retro_chof_362, retro_chof_363, retro_chof_419, retro_chof_433, retro_chof_477, retro_chof_597, retro_chof_755, retro_chof_931,
Erinaceus europaeus ENSEEUG00000009653 ortholog_one2one 2 retrogenes
retro_eeur_189, retro_eeur_231,
Felis catus ENSFCAG00000013038 ortholog_one2many 8 retrogenes
retro_fcat_1007, retro_fcat_1112, retro_fcat_1294, retro_fcat_1435, retro_fcat_1627, retro_fcat_1920, retro_fcat_215, retro_fcat_354,
Homo sapiens ENSG00000140905 ortholog_one2one 10 retrogenes
retro_hsap_1079, retro_hsap_1380, retro_hsap_2376, retro_hsap_275, retro_hsap_3308, retro_hsap_3389, retro_hsap_3742, retro_hsap_3837, retro_hsap_4125, retro_hsap_465,
Gorilla gorilla ENSGGOG00000000232 ortholog_one2one 10 retrogenes
retro_ggor_1073, retro_ggor_1306, retro_ggor_1459, retro_ggor_1742, retro_ggor_1802, retro_ggor_2295, retro_ggor_2584, retro_ggor_2772, retro_ggor_320, retro_ggor_853,
Loxodonta africana ENSLAFG00000015586 ortholog_one2one 3 retrogenes
retro_lafr_554, retro_lafr_822, retro_lafr_900,
Myotis lucifugus ENSMLUG00000005783 ortholog_one2one 12 retrogenes
retro_mluc_1151, retro_mluc_1221, retro_mluc_1466, retro_mluc_1538, retro_mluc_1659, retro_mluc_1685, retro_mluc_2089, retro_mluc_2090, retro_mluc_2139, retro_mluc_2314, retro_mluc_2411, retro_mluc_709,
Macaca mulatta ENSMMUG00000013088 possible_ortholog 5 retrogenes
retro_mmul_1192, retro_mmul_2202, retro_mmul_661, retro_mmul_840, retro_mmul_960,
Mustela putorius furo ENSMPUG00000009677 ortholog_one2one 4 retrogenes
retro_mputfur_1434, retro_mputfur_1492, retro_mputfur_349, retro_mputfur_809,
Nomascus leucogenys ENSNLEG00000026844 possible_ortholog 1 retrogene
retro_nleu_365,
Procavia capensis ENSPCAG00000005820 ortholog_one2one 1 retrogene
retro_pcap_207,
Pongo abelii ENSPPYG00000007585 ortholog_one2one 15 retrogenes
retro_pabe_1146, retro_pabe_1147, retro_pabe_2146, retro_pabe_2728, retro_pabe_2785, retro_pabe_3060, retro_pabe_3121, retro_pabe_3288, retro_pabe_3289, retro_pabe_3479, retro_pabe_392, retro_pabe_393, retro_pabe_675, retro_pabe_676, retro_pabe_899,
Sarcophilus harrisii ENSSHAG00000005529 ortholog_one2one 1 retrogene
retro_shar_239,
Ictidomys tridecemlineatus ENSSTOG00000016433 possible_ortholog 2 retrogenes
retro_itri_31, retro_itri_34,
Tupaia belangeri ENSTBEG00000000056 possible_ortholog 27 retrogenes
retro_tbel_1426, retro_tbel_1716, retro_tbel_1766, retro_tbel_1846, retro_tbel_1923, retro_tbel_2026, retro_tbel_2074, retro_tbel_2168, retro_tbel_2315, retro_tbel_2426, retro_tbel_2489, retro_tbel_2515, retro_tbel_2573, retro_tbel_2769, retro_tbel_3007, retro_tbel_3025, retro_tbel_311, retro_tbel_3140, retro_tbel_3458, retro_tbel_3852, retro_tbel_3924, retro_tbel_4173, retro_tbel_4727, retro_tbel_597, retro_tbel_601, retro_tbel_609, retro_tbel_825,
Tursiops truncatus ENSTTRG00000007992 ortholog_one2one 8 retrogenes
retro_ttru_1052, retro_ttru_128, retro_ttru_1415, retro_ttru_1458, retro_ttru_1778, retro_ttru_211, retro_ttru_310, retro_ttru_795,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_230 67.77 69.94
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2. retro_ptro_734 77.53 50.29
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3. retro_ptro_1738 94.85 56.07
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4. retro_ptro_2163 69.23 73.99
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5. retro_ptro_2304 92.49 100.00
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6. retro_ptro_2381 98.84 100.00
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7. retro_ptro_2540 85.62 91.91
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8. retro_ptro_2613 73.20 56.07
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9. retro_ptro_2802 77.17 52.02
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10. retro_ptro_2803 71.43 75.72
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Download FASTA sequences of all ENSPTRG00000008386 retrocopies