RetrogeneDB ID: retro_mluc_994

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:5371381..5372815(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024016
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003875
• Aliases: None
• Description: None

Sequence

>retro_mluc_994
AAGCTTTATGCCTTGAATGAGAACAACCAATGGGATTATCTGGGCTCAGGGAACGTCACCTCAGTTCCCTCAGAATCCCA
GGGCATGTTTCTGGTAGTTAGGTCGGAATCCAGCGGCTCGCTGGTCCTAGAGACCGAGGTACTCCCAGACACGCCCTATC
AGAAACAAAAAGACACATTAATTGTTTGGTCCGAAGATGAGAACCACGGAATGGCGTTGAGTTTCCGAGACTCGGAGAGT
TGTCAGGAGACCTGGGAAGCCATTTGCCGGGTTCAAGGTAAAGACCCCACTGTCAACGTCACACAGGACCTCTCAGATGA
TATAGAGGAAGACATTAATGAAATGCTAGAAACCGATGATTTGGATGAACTGCCTAACTGTGAACTCAGTAAACTTAAAC
AGATCGCTAACTTAGTCACCTCAGCTTTCGGTTCACCTCTCCTCAGGAGAAGGCTGGCCCTGGTCTTAGAAAATGAGAGC
TATATTAAAAAACTACTGCAGCTGTTACACACCTGTGAGAACGTGGGCTACACTGAAGGCTTATACCATTTAAATACAAT
TATTAAAGGAATGTTTTTCCTCGACAAGACAGCTCTGCTTGAGATCTTGTTTTCTGATGAGTGCATCATGGATGTGATAG
GATGCCTTGAATATGATCCTGCTTTGGATCAGCCAAAAAAGCATAGGGAATTCTTGACCCAAAATGCAAATTTCAAGGAA
GTTATACCGATAACAACCTGTAAACTTAGACAAAGAATACATCAGACATACAGGGTACAGTATATTCAAGACATTCTTTT
TCCTACACAATCGGTATTGGAAGAGAATTGTCTTTCTGCTCTTAAAACTTTTATTTTCCTCAACAAGATGGAGATAATCC
ACATGCTGCAGGGAGATGACGAGTTTTTGCCTCAAATATTTGAACAGTTAAAGGACAAGACTATTGATAATGATAAACGC
CGAGAATTGTTATTTTTTCTCAAGGAATTCGTTGCATTTGCCCAGATATTAAAGCCTCGAAGCAAGGATGCACTATATCA
AACATTGACACAAATGGGAATTCTTCCTGCTATTAAAGTTATAATGAGCCTGGATAATTTTCAAATAAAGTCATCTGCTA
TTGAGATATTTACTTATATGGTAGATCATAGTCCATCCATGATCCGAGAATTCATAATAGAAGACCAGCAGAATGAAAAC
GGTAGCCTTCTCATTAATTTAGTCATTAAACAAATGATCTGTGATACTGATCCTGAGCAAGCAGGTGCTTTACATATAAT
GAAACTTCTTCGTTTAGTACTTGATCCAGACAACATGATAGCGATGCCACATAAATGTGAAAGAAGTATATTTCTAAATT
TCTTTTATAAACAATGTATGCATAACATAATACTACCACTTTGGGCCACCACATCAGAAGATACATTTGAAGAG

Alignment

ORF - retro_mluc_994 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.46 %
• Parental protein coverage: 56.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENY
          K.Y.LNE..QWD..G.G.V.S....E..GM.L.VR.ES.GSL.LE....P.T.YQKQ.DTLIVWSE.EN.
Retrocopy KLYALNENNQWDYLGSGNVTSV-PSESQGMFLVVRSESSGSLVLETEVLPDTPYQKQKDTLIVWSEDENH

Parental  DLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELNKLEEIADL
          ..ALSF.....C.E.WE.IC.VQGKDP.V.VTQDL.D..EE....EM.ET..L..LP.CEL.KL..IA.L
Retrocopy GMALSFRDSESCQETWEAICRVQGKDPTVNVTQDLSDDIEED-INEMLETDDLDELPNCELSKLKQIANL

Parental  VTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDEC
          VTS...SP..R..LAL.LENE.YIKKLLQL...CEN...TEGL.HL..II.G..FL.K..L.E..FSDEC
Retrocopy VTSAFGSPLLRRRLALVLENESYIKKLLQLLHTCENVGYTEGLYHLNTIIKGMFFLDKTALLEILFSDEC

Parental  IMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFL
          IMDV.GCLEYDPAL.QPK.HREFLT..A.FKEVIPIT...LRQ.IHQTYRVQYIQDI..PT.SV.EEN.L
Retrocopy IMDVIGCLEYDPALDQPKKHREFLTQNANFKEVIPITTCKLRQRIHQTYRVQYIQDILFPTQSVLEENCL

Parental  STLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKT
          S.L..FIF.NK.EI..MLQ.D..FL...F.QL.D...D.DKRREL..F.KEF.AF.Q.L.P...DA...T
Retrocopy SALKTFIFLNKMEIIHMLQGDDEFLPQIFEQLKDKTIDNDKRRELLFFLKEFVAFAQILKPRSKDALYQT

Parental  LAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTD
          L...GILPA....M..D..Q..S.A..IF.Y.V..SPSM.REF.....QQ.....LLIN.VI.QMICDTD
Retrocopy LTQMGILPAIKVIMSLDNFQIKSSAIEIFTYMVDHSPSMIREFIIED-QQNENGSLLINLVIKQMICDTD

Parental  PELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDRYEK
          PE..GA...M.LLR...DP.NM.A...K.E.S.FLNFFY..CMH....PL...TSED..E.
Retrocopy PEQAGALHIMKLLRLVLDPDNMIAMPHKCERSIFLNFFYKQCMHNIILPLWATTSEDTFEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_994 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003843	1 retrocopy	retro_amel_48,
Bos taurus	ENSBTAG00000000545	1 retrocopy	retro_btau_232,
Canis familiaris	ENSCAFG00000002860	1 retrocopy	retro_cfam_226,
Equus caballus	ENSECAG00000013819	1 retrocopy	retro_ecab_23,
Echinops telfairi	ENSETEG00000002420	1 retrocopy	retro_etel_1699,
Felis catus	ENSFCAG00000026457	1 retrocopy	retro_fcat_13,
Homo sapiens	ENSG00000138041	1 retrocopy	retro_hsap_4799,
Loxodonta africana	ENSLAFG00000017825	1 retrocopy	retro_lafr_791,
Myotis lucifugus	ENSMLUG00000003875	1 retrocopy	retro_mluc_994 ,
Macaca mulatta	ENSMMUG00000007001	1 retrocopy	retro_mmul_238,
Mustela putorius furo	ENSMPUG00000002435	1 retrocopy	retro_mputfur_92,
Nomascus leucogenys	ENSNLEG00000009338	1 retrocopy	retro_nleu_1112,
Oryctolagus cuniculus	ENSOCUG00000006880	1 retrocopy	retro_ocun_9,
Otolemur garnettii	ENSOGAG00000009837	1 retrocopy	retro_ogar_140,
Pan troglodytes	ENSPTRG00000011933	1 retrocopy	retro_ptro_3191,
Sus scrofa	ENSSSCG00000008398	1 retrocopy	retro_sscr_1187,
Ictidomys tridecemlineatus	ENSSTOG00000006276	1 retrocopy	retro_itri_63,
Tursiops truncatus	ENSTTRG00000000027	1 retrocopy	retro_ttru_1397,