RetrogeneDB ID: | retro_ogar_140 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873570.1:12747127..12749386(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000031494 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | SMEK2 | ||
| Ensembl ID: | ENSOGAG00000009837 | ||
| Aliases: | None | ||
| Description: | SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267] |
Retrocopy-Parental alignment summary:
>retro_ogar_140
ATGGAAGACGATAAGCGGTACCGTGTAAGAGTCTATGTCTTGAAAGAAAACCAGCAATGGGATGAGATCGGTGCCGGGCA
AATCTCCGCCACCTATGTTGAGGAACTCCGGGACGTATTTCTCCTCGTACGTTCGGAGTCAGACAGTTCACTGATCTTGG
AGTCGAGAATACAGCCAAACACCATCTATCAGAAGCAACAGGGGACGGTGATCGTTTGGTCTGAAGAAGAGAATCACGGT
TTGGCGTTAAGCTTTGAAGACGCCGACGGCTGTCGAGAAATCTGGGAAGACATCTGCCACATTCAAGGTAAAGATCCCAC
CATTGAAATTACACAAGCTCTTTTGAGTGAGTTACGAGAGCAAATTAGCGAAATGCCTGACATCTTTAATATAGTTGAGC
TCCCAGACTGTGAACTCGATACACTCGGGCAAATTGCCGACTTAATTAACTCAATTCTCGCCTCCGCTGACGGCAGGGAA
AAGATGGCTGTGATACTGGAAAGTGACGATTATATTAAAAAGTTACTGCAGCTTTTCCGCGCTTGTGAAATCCTGCAAAA
TATGAAATCCTTACACTATTTGCATGAAATTATTAAGGGGATTTTATGCCTTAATAAGACACCTCTGACTGAGGTTATGT
TTTCTGACGAGTGTATCTTGGATGTGGTGGGATGTCTTGAATATGACCCTGCTTTTCCTGAGCCAAAACGCTATCGAGAA
TTTTTGACCCAAAATGCCAAGTTCAAGGAGGTTATACCAATAGCAGACATTGAACTGAGGCAAAAAATACATCAGACTTA
CAGGGCGCAGTTCATTTATGACATTCTTTTGCCTGTCCCAACCGTGTTCGACGAGAATTATCTTTCTACGATTACGACGT
TTATTTTTTTCAATAAGGTTGAGATAGTTAGCATGCTGCAGGGTGATGACAAGTTTTTGACTGAAGTTTTCGCACAGTTA
AAGGATAAAACTACAAGTGATGATAAACGGTACGAATTGCTGTCTTTTTTCAAAGAATTCTGTAACTTTTCTCGCACATT
ACAGCCTCAAAGCAAAGATGCATTGTTCAAAACGTTGACACATTTGGGAATTCTTCCGGTTCTTAAAATCATTATGAGCG
CGGAAAATTTGCCAATTAGGTCAACTGCTACCGATATATTTGCTTATATAATAGAGTACAACCCGTCTTTAATCCGAAAA
TTCGCAATAGAAGAAGCCCGTAAGGGCGGGGATCATGACTTTCTCATTAACATAGTAATTTCACAGATGATCTGTGATAC
TGATCCTGAGCTGGCAGGTGCTATTCATTTGATGGAAATTATTCGTGCTCTCCTTGATCCAGAGACCATGGTGACGACAT
CGAGTAAATGTGAAAGAAGTGAGTTTTTAAATTTCTTCTATAAACGTTGCATGAATAAGTTGGTGGCACCACTTATGGCC
ACCACTTCAGAAGAGATAAGTGAGGAAGAGAATATAGATGGCTCTAATGAAAACATAACTTCTCTCAATTATCAAAGAGC
ACATCTGCTTTCTTTAATTGTAGAGCTACTTTCATTTTGTGTACAACATCACACATATTACATAAAAAATTATATTTTCA
ACAAAGACTTGCTAAGAAAAGTCTTGATCTTGATGAAGTCAAAGCATACTTTTGTGATCTTGTGTGCTATTCGCTTTATG
AGAAATATAGTTGGACTTAAAGATGAATTTTATAATCGTTACATCATCAAAGGAAATTTTTTAGAGCCAGTTGTAACTGC
TTTTCTGGACAATGGGACTCGATACAATATGTTAAATTCAGCTATTATTGAGATGTTTGACTACATAAGAGTCGAAAATA
TCAAGTCTCTTGTTGCACACATAATGGAAAATTATTATAAGAGTCTTGAAGAGATTGAGTATGTTCAGACATTCAAAGGA
TTGAAGGTTAGATATGAGCAAGAGAAAGAAAGACAAAAGAAAATACGAAAAAATTTACATTGTGTTCTCGGTAGCAAATT
ATATCGCAAAAGAGCCAAAATCTTGGAGGTGAAGGAAGAAACCTATTCCAAGGCAGAAGAAGAAGATGATGATGTGATGC
CTCCACTGGAAGACGAAATTCCAGATTATTATGAACAGTGTACTCACACTAAAGAAAGAGAAAAAGAAGATAAGGTAGAC
ACTCCCCAAAGAACATCTTCTGGTAGCTTCGAAGTTTCTTCGACTTGCTCTGCTGATCCTGAGAATACAGCAAGTAGCCC
AAGTGATCAAAGAGTAGTT
ATGGAAGACGATAAGCGGTACCGTGTAAGAGTCTATGTCTTGAAAGAAAACCAGCAATGGGATGAGATCGGTGCCGGGCA
AATCTCCGCCACCTATGTTGAGGAACTCCGGGACGTATTTCTCCTCGTACGTTCGGAGTCAGACAGTTCACTGATCTTGG
AGTCGAGAATACAGCCAAACACCATCTATCAGAAGCAACAGGGGACGGTGATCGTTTGGTCTGAAGAAGAGAATCACGGT
TTGGCGTTAAGCTTTGAAGACGCCGACGGCTGTCGAGAAATCTGGGAAGACATCTGCCACATTCAAGGTAAAGATCCCAC
CATTGAAATTACACAAGCTCTTTTGAGTGAGTTACGAGAGCAAATTAGCGAAATGCCTGACATCTTTAATATAGTTGAGC
TCCCAGACTGTGAACTCGATACACTCGGGCAAATTGCCGACTTAATTAACTCAATTCTCGCCTCCGCTGACGGCAGGGAA
AAGATGGCTGTGATACTGGAAAGTGACGATTATATTAAAAAGTTACTGCAGCTTTTCCGCGCTTGTGAAATCCTGCAAAA
TATGAAATCCTTACACTATTTGCATGAAATTATTAAGGGGATTTTATGCCTTAATAAGACACCTCTGACTGAGGTTATGT
TTTCTGACGAGTGTATCTTGGATGTGGTGGGATGTCTTGAATATGACCCTGCTTTTCCTGAGCCAAAACGCTATCGAGAA
TTTTTGACCCAAAATGCCAAGTTCAAGGAGGTTATACCAATAGCAGACATTGAACTGAGGCAAAAAATACATCAGACTTA
CAGGGCGCAGTTCATTTATGACATTCTTTTGCCTGTCCCAACCGTGTTCGACGAGAATTATCTTTCTACGATTACGACGT
TTATTTTTTTCAATAAGGTTGAGATAGTTAGCATGCTGCAGGGTGATGACAAGTTTTTGACTGAAGTTTTCGCACAGTTA
AAGGATAAAACTACAAGTGATGATAAACGGTACGAATTGCTGTCTTTTTTCAAAGAATTCTGTAACTTTTCTCGCACATT
ACAGCCTCAAAGCAAAGATGCATTGTTCAAAACGTTGACACATTTGGGAATTCTTCCGGTTCTTAAAATCATTATGAGCG
CGGAAAATTTGCCAATTAGGTCAACTGCTACCGATATATTTGCTTATATAATAGAGTACAACCCGTCTTTAATCCGAAAA
TTCGCAATAGAAGAAGCCCGTAAGGGCGGGGATCATGACTTTCTCATTAACATAGTAATTTCACAGATGATCTGTGATAC
TGATCCTGAGCTGGCAGGTGCTATTCATTTGATGGAAATTATTCGTGCTCTCCTTGATCCAGAGACCATGGTGACGACAT
CGAGTAAATGTGAAAGAAGTGAGTTTTTAAATTTCTTCTATAAACGTTGCATGAATAAGTTGGTGGCACCACTTATGGCC
ACCACTTCAGAAGAGATAAGTGAGGAAGAGAATATAGATGGCTCTAATGAAAACATAACTTCTCTCAATTATCAAAGAGC
ACATCTGCTTTCTTTAATTGTAGAGCTACTTTCATTTTGTGTACAACATCACACATATTACATAAAAAATTATATTTTCA
ACAAAGACTTGCTAAGAAAAGTCTTGATCTTGATGAAGTCAAAGCATACTTTTGTGATCTTGTGTGCTATTCGCTTTATG
AGAAATATAGTTGGACTTAAAGATGAATTTTATAATCGTTACATCATCAAAGGAAATTTTTTAGAGCCAGTTGTAACTGC
TTTTCTGGACAATGGGACTCGATACAATATGTTAAATTCAGCTATTATTGAGATGTTTGACTACATAAGAGTCGAAAATA
TCAAGTCTCTTGTTGCACACATAATGGAAAATTATTATAAGAGTCTTGAAGAGATTGAGTATGTTCAGACATTCAAAGGA
TTGAAGGTTAGATATGAGCAAGAGAAAGAAAGACAAAAGAAAATACGAAAAAATTTACATTGTGTTCTCGGTAGCAAATT
ATATCGCAAAAGAGCCAAAATCTTGGAGGTGAAGGAAGAAACCTATTCCAAGGCAGAAGAAGAAGATGATGATGTGATGC
CTCCACTGGAAGACGAAATTCCAGATTATTATGAACAGTGTACTCACACTAAAGAAAGAGAAAAAGAAGATAAGGTAGAC
ACTCCCCAAAGAACATCTTCTGGTAGCTTCGAAGTTTCTTCGACTTGCTCTGCTGATCCTGAGAATACAGCAAGTAGCCC
AAGTGATCAAAGAGTAGTT
ORF - retro_ogar_140 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.24 % |
| Parental protein coverage: | 57.36 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVW |
| D.R.RV.VY.L.E..QWD..G.G..S.TYVEEL....LLVR.ESD.SL.LES.I.PNT.YQKQQ.T.IVW | |
| Retrocopy | DKRYRVRVYVLKENQQWDEIGAGQISATYVEELRDVFLLVRSESDSSLILESRIQPNTIYQKQQGTVIVW |