Parental gene:

SMEK2, ENSECAG00000013819

Aliases:None
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Organism:Horse (Equus caballus)
Coordinates:15:44667096..44728938(+)


>ENSECAG00000013819
ATGTCGGATACGCGACGGCGAGTGAAGGTCTATACCCTGAACGAAGACCGGCAATGGGACGATCGAGGCACCGGGCACGT
CTCCTCCACTTATGTGGAGGAGCTCAAGGGAATGTCGCTCCTGGTTCGGGCAGAGTCCGACGGATCACTGCTCTTGGAAT
CAAAGATAAATCCAAACACTGCATATCAGAAACAACAGGCAAGCGATACATTAATTGTTTGGTCAGAAGCAGAAAACTAT
GATCTGGCTCTAAGTTTTCAGGAAAAAGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTCAGGTTCAGGGTAAGGATCC
ATCAGTGGAAGTAACACAAGACCTCATTGATGAATCAGAAGAAGAACGATTTGAAGAAATGCCTGAAACCAGTCATCTGA
TTGACCTGCCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGT
AGAGAAAAGCTGGCTCTGGCCTTGGAAAACGAAGGCTATATTAAAAAACTACTGCAGCTGTTCCAAGCTTGTGAGAACCT
AGAAAACACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTGTTTGAGG
TAATGTTTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTAGCCCAGCCAAAAAGGCAT
AGAGAATTCTTGACCAAAACTGCAAAGTTTAAGGAAGTTATACCAATAACAGACTCTGAACTAAGACAAAAAATACATCA
GACTTATAGGGTACAGTACATTCAGGACATCATTTTGCCTACGCCATCTGTATTTGAAGAGAATTTTCTTTCTACTCTTA
CGTCTTTTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCA
CAATTAACAGATGAGGCTACAGATGATGATAAACGGCGTGAATTGGTTAATTTTTTCAAGGAATTTTGTGCATTTTCTCA
GACATTACAACCTCAAAACAGGGACGCATTTTTCAAAACTTTGGCAAAGTTGGGGATTCTTCCAGCTCTTGAAATTGTAA
TGGGCATGGATGATTTGCAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATGGTT
CGAGAATTTGTAATGCAAGAAGCCCAGCAGAGTGATGACGATATCCTTCTTATTAATGTAGTAATTGAACAAATGATCTG
TGATACTGATCCTGAGCTAGGAGGTGCCGTTCAGTTAATGGGACTTCTTCGTACTCTAATTGATCCAGAGAATATGCTAG
CTACAACTAATAAAACTGAAAAAAGTGAATTTCTGAATTTCTTCTACAACCATTGTATGCATGTCCTCACAGCACCGCTT
TTGACCAATACTTCAGAAGACAGATGTGAAAAGGATAATATAGTTGGATCTAACAAAAACAGCACGATTTGTCCTGGTAA
GTATGGGTCTGTTCAAATATTGGCTGTGTTGTTAGCTCTACTCACATTTTGTGTGGAACATCACACATATACAATAAAAT
ATATTATGAACAAGGACTTGCTAAGAAGAGTCTTGGACTTGATGAATTCAAAGCACACTTTCCTGGCCTTGTGTGCTCTT
CGTTTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATCACCAAGGGAAATCTTTTTGAGCCAGT
AATAAATGCTCTTCTGGATAATGGAACTCGGTACAATCTATTGAATTCAGCTGTTGTTGAGTTATTTGAATTTATAAGAG
TGGAAGATATCAAGTCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGAATATGTTCAGACA
TTCAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAACTGAACAGTGTACCATCTATATTGCG
TAGTAACAGATTTCGCAGAGATGCAAAAGCCTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAG
GAAAAGCAGTTGTGGCCCCAGTGGAAAAATCTAAGTCAGAAGATGATTTTCCAGATAGTTATGAAAAATTTATGGAGACT
AAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTTCTGGTAGCTTCAAATTTACTTTCTCCCA
CTCCACCAGTGCTGCTAATGGAACAAACAGCACAAACAGTAAATCTGTAGTGGCTCAGACACCACCAGCAAGTTCTAATG
GATCCTCTTCCAAAACTACAAACTTGGCTACATCAGTGACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGATTATCCA
GATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCATCTCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 24 .43 RPM
SRP021940_embryo 50 .12 RPM
SRP021940_cerebellum 21 .24 RPM
SRP021940_testis 29 .61 RPM
SRP021940_placental_villous 34 .59 RPM
SRP021940_articular_cartilage 24 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Echinops telfairi ENSETEG00000002420 ortholog_one2many 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2many 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_23 64.58 90.91
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Download FASTA sequences of all ENSECAG00000013819 retrocopies