Parental gene:

SMEK2, ENSAMEG00000003843

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192376.1:1971880..2030923(+)


>ENSAMEG00000003843
GCAGGCACCTCGCGGCGGCGAGTGAAGGTCTATACCCTCAACGAAGACCGTCAATGGGACGACCGAGGCACCGGGCATGT
CTCCTCCACTTATGTGGAGGAGCTCAAGGGGATGTCGCTGCTGGTTCGGGCTGAGTCCGACGGATCACTACTCTTGGAAT
CAAAGATAAATCCAAACACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCAGAAGCTGAGAACTATGATCTG
GCTCTAAGTTTTCAGGAAAAAGCTGGCTGCGATGAGATTTGGGAAAAAATTTGTCAGGTTCAAGGTAAGGATCCATCAGT
GGAAGTCACACAGGACCTCATTGATGAATCAGAAGAAGAAAGATTTGAAGAAATGCCTGAAACCAGTCATCTGATTGACC
TGCCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTAGGGAA
AAGCTGGCCCTGGCCTTGGAAAATGAAGGCTATATTAAAAAACTACTGCAGCTGTTCCAAGCGTGTGAGAATCTAGAAAA
CACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTGTTTGAAGTAATGT
TTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGGCATAGAGAA
TTCTTGACCAAAACTGCAAAGTTTAAGGAAGTTATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAATACATTCAGGACATCATTTTGCCTACGCCATCCGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTT
TTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCACAGTTA
ACGGATGAGGCTACAGATGATGATAAACGGCGTGAATTGGTTAACTTTTTCAAGGAATTTTGTGCATTTTCTCAGACATT
ACAACCTCAAAACAGGGATGCATTTTTCAAAACTTTGGCAAAGTTGGGAATTCTTCCTGCTCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTCAGATCAGCAGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATGGTCCGAGAA
TTTGTAATGCAAGAAGCCCAGCAGAGTGATGATGATATCCTTCTCATTAATGTTGTAATTGAACAAATGATCTGTGATAC
TGATCCTGAGCTAGGAGGTGCTGTTCAGTTAATGGGACTTCTTCGTACTCTGATTGATCCAGAGAACATGCTGGCTACAA
CCAATAAAACTGAAAAAAGTGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTTCTCACAGCACCACTTTTGACC
AATACTTCAGAAGACAAGTGTGAAAAGGACTTTATCAAAACTAACTTGCCCTATTTTTTTCAAAATTTTTATTGTCTTTT
AACAATTCCTCATGTGCACCCAGTTCTCTTAACGGTTATTATGCAGGATAATATAGTTGGATCTAACAAAAACAGCACAA
TTTGCCCTGATAATTATCAAACAGCACAGCTGCTTGCCTTAATTTTAGAACTACTCACATTTTGTGTGGAACATCACACA
TATCATATAAAAAACTATATTATGAACAAGGACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACTTTCCT
GGCCTTGTGTGCTCTTCGTTTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATCACGAAGGGAA
ATCTTTTCGAGCCAGTTATAAATGCTCTTCTGGATAATGGTACTCGGTACAATCTGTTGAATTCAGCTGTTATTGAGTTA
TTTGAGTTTATAAGAGTGGAAGATATCAAGTCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCAAT
TGAATATGTTCAGACATTCAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAGAATCAGAAACTGAACAGTG
TACCATCTATATTGCGTAGTAACAGATTTCGCAGAGATGCAAAGGCCTTGGAAGAGGATGAGGAAATGTGGTTTAATGAA
GATGAGGAGGAGGAAGGAAAAGCAGTTGTGGCACCAGTAGAGAAATCTAAGCCAGAAGATGATTATCCAGATACTTATGA
AAAATTTATGGAGACAAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCTAAAAGGACATCATCTAGTGGCTTCA
AATTTACTTTCTCCCACTCTGCCAGTGCTGCTAATGGAACAAATAGTAAATCTGTAGTGGCCCAGACACCACCAGCAAGT
TCCAATGGATCCTCTTCCAAAACTACAAATTTGGCCACATCAGTAACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGA
TTATCCAGATGATGAAGAGGAGGACGAAGAAGAAGAAACATCTCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2many 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2many 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_48 71.69 56.94
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Download FASTA sequences of all ENSAMEG00000003843 retrocopies