Parental gene:

SMEK2, ENSPTRG00000011933

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:56415270..56483885(-)


>ENSPTRG00000011933
ATGTCGGATACGCGGCGGCGAGTGAAGGTCTATACCCTGAACGAAGACCGGCAATGGGACGACCGAGGCACCGGGCACGT
CTCCTCCACTTACGTGGATGAGCTCAAGGGGATGTCGCTGCTGGTTCGGGCAGAGTCCGACGGATCACTACTCTTGGAAT
CAAAGATAAATCCAAATACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCAGAAGCAGAGAACTATGATTTG
GCTCTGAGTTTTCAGGAGAAAGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTCAGGTTCAAGGTAAAGACCCATCAGT
GGAAGTCACACAGGACCTCATTGATGAATCTGAAGAAGAACGATTTGAAGAAATGCCTGAAACTAGTCATCTGATTGACC
TGCCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTGCTCTCCTCACCTATCCGTAGGGAA
AAGCTGGCTCTCGCCTTGGAAAATGAAGGCTATATTAAAAAACTATTGCAGCTGTTCCAAGCTTGCGAGAACCTAGAAAA
CACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTTTTTGAGGTAATGT
TTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGACATAGAGAA
TTCTTGACCAAAACTGCAAAGTTCAAGGAAGTTATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAGTACATTCAGGACATCATTTTGCCCACACCATCTGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTT
TTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCACAATTA
ACAGATGAGGCTACAGATGATGATAAACGGCGTGAATTGGTTAATTTTTTCAAGGAGTTTTGTGCATTTTCTCAGACATT
ACAACCTCAAAACAGGGATGCATTTTTCAAAACATTGGCAAAATTGGGAATTCTTCCTGCTCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAATTTAGTCCATCTATGGTCCGAGAG
TTTGTAATGCAAGAAGCTCAGCAGAGTGATGACGATATTCTTCTTATTAATGTGGTAATTGAACAAATGATCTGTGATAC
TGATCCTGAGCTAGGAGGCGCTGTTCAGTTAATGGGACTTCTTCGTACTCTAATTGATCCAGAGAACATGCTGGCTACAA
CTAATAAAACCGAAAAAAGTGAATTTCTAAATTTTTTCTACAACCATTGTATGCATGTTCTCACAGCACCACTTTTGACC
AATACTTCAGAAGACAAATGTGAAAAGGATTTTTTTTTAAAACATTACAGATATAGTTGGAGTTTCATATGTACCCCTTC
ACATTCCCATTCCCATTCTACCCCCTCTTCCTCCATCTCTCAAGATAATATAGTTGGATCAAACAAAAACAACACAATTT
GTCCCGATAATTATCAAACAGCACAGCTACTTGCCTTAATTTTAGAGTTACTCACATTTTGTGTGGAACATCACACATAT
CACATAAAAAACTATATTATGAACAAGGACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACTTTTCTGGC
CTTGTGTGCCCTTCGCTTTATGAGGCGGATAATTGGACTTAAAGATGAATTTTATAATCGTTACATCACGAAGGGAAATC
TTTTTGAGCCAGTTATAAATGCACTTCTGGATAATGGAACTCGGTACAATCTGTTGAATTCAGCTGTTATTGAGTTGTTT
GAATTTATAAGAGTGGAAGATATCAAGTCTCTTACTGCCCATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGA
ATATGTTCAGACATTCAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAACTGAACAGTGTAC
CATCTATATTGCGTAGTAACAGATTTCGCAGAGATGCAAAAGCCTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGAT
GAAGAAGAGGAAGGAAAAGCAGTTGTGGCACCAGTGGAAAAATCTAAGCCAGAAGATGATTTTCCAGATAATTATGAAAA
GTTTATGGAGACTAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTCCTGGTGGCTTCAAAT
TTACTTTCTCCCACTCTGCCAGTGCTGCTAATGGAACAAACAGTAAATCTGTAGTGGCTCAGACACCACCAGCAACTTCT
AATGGATCCTCTTCCAAAACCACAAACTTGCCTACGTCAGTAACAGCCACCAAGGGAAGTTTGGTTGGCTTAGTGGATTA
TCCAGATGATGAAGAGGAAGATGAAGAAGAAGAAACGTCCCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .90 RPM
SRP007412_cerebellum 46 .64 RPM
SRP007412_heart 26 .58 RPM
SRP007412_kidney 65 .48 RPM
SRP007412_liver 42 .39 RPM
SRP007412_testis 80 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2one 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2one 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000006638 within_species_paralog 1 retrogene
retro_ptro_124,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3191 66.80 57.71
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Download FASTA sequences of all ENSPTRG00000011933 retrocopies