Parental gene:

ENSSSCG00000025276

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:14:98522958..98550277(+)


>ENSSSCG00000025276
ATGGAGGGCGGTGGAGGAAGCGGCAACAAAACCACAGGGGGATTGGCCGGCTTTTTCGGAGCCGGCGGAGCTGGCTACTC
GCACGCGGATCTGGCGGGAGTCCCGCTAACTGGTATGAATCCTCTGTCTCCTTATTTAAATGTGGATCCACGATATCTTG
TGCAGGACACAGATGAGTTTATTTTGCCAACTGGAGCTAATAAAACCCGGGGCAGATTTGAACTGGCCTTCTTTACCATT
GGAGGATGTTGTATGACAGGGGCTGCATTTGGGGCTGTAAATGGCCTACGGCTAGGATTGAAGGAAACCCAGAACATGGC
CTGGTCCAAACCAAGAAACGTACAGATTTTGAATATGGTGACTAGACAAGGGGCACTTTGGGCTAATACTCTAGGTTCTC
TGGCTTTGCTCTATAGTGCATTTGGTGTCATCATTGAGAAAACAAGAGGTGCAGAAGATGACCTTAACACAGTAGCAGCT
GGAACCATGACAGGCATGTTATATAAATGTACAGGTGGTCTTCGAGGGGTAGCACGAGGTGGTCTAGCAGGACTAACACT
TACGAGCCTCTATGCACTATATAATAATTGGGAGCACATGAAAGGCTCCTTACTGCAACAGTCACTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .83 RPM
SRP014902_testis 16 .55 RPM
SRP018856_adipose 23 .61 RPM
SRP018288_kidney 62 .45 RPM
SRP018288_lung 29 .84 RPM
SRP018288_liver 44 .45 RPM
SRP018288_heart 51 .44 RPM
SRP035408_liver 25 .57 RPM
SRP035408_brain 29 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007501 ortholog_one2one 1 retrogene
retro_amel_1488,
Canis familiaris ENSCAFG00000029477 ortholog_one2one 1 retrogene
retro_cfam_329,
Choloepus hoffmanni ENSCHOG00000007073 ortholog_one2one 1 retrogene
retro_chof_797,
Callithrix jacchus ENSCJAG00000013336 ortholog_one2one 1 retrogene
retro_cjac_2965,
Cavia porcellus ENSCPOG00000019917 ortholog_one2one 2 retrogenes
retro_cpor_1013, retro_cpor_321,
Monodelphis domestica ENSMODG00000002661 ortholog_one2one 2 retrogenes
retro_mdom_1202, retro_mdom_860,
Mus musculus ENSMUSG00000013701 ortholog_one2many 1 retrogene
retro_mmus_2,
Oryctolagus cuniculus ENSOCUG00000000525 ortholog_one2many 1 retrogene
retro_ocun_73,
Otolemur garnettii ENSOGAG00000015393 ortholog_one2one 1 retrogene
retro_ogar_2627,
Ochotona princeps ENSOPRG00000005255 ortholog_one2one 2 retrogenes
retro_opri_520, retro_opri_920,
Procavia capensis ENSPCAG00000015914 ortholog_one2one 1 retrogene
retro_pcap_181,
Rattus norvegicus ENSRNOG00000019811 ortholog_one2many 3 retrogenes
retro_rnor_1804, retro_rnor_225, retro_rnor_661,
Sorex araneus ENSSARG00000010335 ortholog_one2one 1 retrogene
retro_sara_86,
Ictidomys tridecemlineatus ENSSTOG00000007041 ortholog_one2one 1 retrogene
retro_itri_1043,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_404 86.26 86.60
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Download FASTA sequences of all ENSSSCG00000025276 retrocopies