Parental gene:

ENSSSCG00000021591

Aliases:None
Description:Sus scrofa RNA binding motif (RNP1, RRM) protein 3 (RBM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001243419]
Organism:Pig (Sus scrofa)
Coordinates:X:47591668..47595208(+)


>ENSSSCG00000021591
ATGTCTTCTGAAGAAGGGAAGCTCTTCGTGGGAGGGCTCAACTTCAACACAGATGAGCAGGCTCTGGAAGACCACTTCAG
CAGTTTCGGACCTATTTCTGAGGTGGTCGTTGTCAAGGACCGGGAGACTCAGCGATCCCGGGGTTTTGGCTTCATTACCT
TCACCAATCCAGAACATGCTTCAAATGCAATGAGAGCCATGAATGGAGAGTCTCTGGATGGTCGCCAGATCCGTGTGGAC
CACGCTGGCAAGTCGGCCCGGGGAACGAGAGGGGGTGCCTTTGGGGCCCGTGGTCGTGGCTACTCTAGAGGTGGAGGGGA
CCAGGGCTATGGAAATGGCAGATATGACAGTCGACCTGGAGGATATGGCTACGGATATGGATATGGAAGGTCCAGAGACT
ATGGCAGCAGAAGCCAGGGTAGTTATGACCGCTACTCAGGAGGAAATTACAGGGACAATTACGACAACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 30 .66 RPM
SRP014902_testis 84 .73 RPM
SRP018856_adipose 58 .22 RPM
SRP018288_kidney 45 .31 RPM
SRP018288_lung 56 .11 RPM
SRP018288_liver 22 .87 RPM
SRP018288_heart 48 .41 RPM
SRP035408_liver 16 .53 RPM
SRP035408_brain 25 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013718 ortholog_one2many 1 retrogene
retro_acar_197,
Ailuropoda melanoleuca ENSAMEG00000012653 ortholog_one2many 1 retrogene
retro_amel_519,
Bos taurus ENSBTAG00000025848 ortholog_one2many 1 retrogene
retro_btau_1144,
Cavia porcellus ENSCPOG00000003553 possible_ortholog 1 retrogene
retro_cpor_950,
Dasypus novemcinctus ENSDNOG00000010420 possible_ortholog 16 retrogenes
retro_dnov_1343, retro_dnov_1380, retro_dnov_1463, retro_dnov_151, retro_dnov_1718, retro_dnov_180, retro_dnov_2034, retro_dnov_2076, retro_dnov_212, retro_dnov_213, retro_dnov_2217, retro_dnov_2367, retro_dnov_2581, retro_dnov_733, retro_dnov_778, retro_dnov_974,
Dipodomys ordii ENSDORG00000000182 ortholog_one2many 1 retrogene
retro_dord_547,
Equus caballus ENSECAG00000024257 ortholog_one2one 2 retrogenes
retro_ecab_130, retro_ecab_589,
Homo sapiens ENSG00000102317 ortholog_one2many 1 retrogene
retro_hsap_265,
Gadus morhua ENSGMOG00000012137 ortholog_many2many 1 retrogene
retro_gmor_4,
Loxodonta africana ENSLAFG00000007003 ortholog_many2many 1 retrogene
retro_lafr_1091,
Myotis lucifugus ENSMLUG00000003996 ortholog_one2many 1 retrogene
retro_mluc_1013,
Mus musculus ENSMUSG00000031167 ortholog_one2many 4 retrogenes
retro_mmus_2044, retro_mmus_2963, retro_mmus_3019, retro_mmus_501,
Nomascus leucogenys ENSNLEG00000007841 ortholog_one2many 2 retrogenes
retro_nleu_2591, retro_nleu_867,
Pongo abelii ENSPPYG00000020314 ortholog_one2many 1 retrogene
retro_pabe_40,
Pan troglodytes ENSPTRG00000021864 ortholog_one2many 1 retrogene
retro_ptro_222,
Pteropus vampyrus ENSPVAG00000015630 ortholog_one2one 1 retrogene
retro_pvam_953,
Ictidomys tridecemlineatus ENSSTOG00000027493 ortholog_many2many 1 retrogene
retro_itri_142,
Tarsius syrichta ENSTSYG00000008670 ortholog_one2many 4 retrogenes
retro_tsyr_1733, retro_tsyr_197, retro_tsyr_2002, retro_tsyr_679,
Tursiops truncatus ENSTTRG00000008587 ortholog_one2one 3 retrogenes
retro_ttru_1898, retro_ttru_928, retro_ttru_938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_842 62.42 91.67
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Download FASTA sequences of all ENSSSCG00000021591 retrocopies