Parental gene:

PTBP1, ENSPTRG00000010165

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:19:729062..743923(+)


>ENSPTRG00000010165
ATGGACGGCATTGTCCCAGATATAGCCGTTGGTACAAAGCGGGGATCTGACGAGCTTTTCTCTACTTGTGTCACTAACGG
ACCGTTTATCATGAGCAGCAACTCGGCTTCTGCAGCAAACGGAAATGACAGCAAGAAGTTCAAAGGTGACAGCCGAAGCG
CAGGCGTCCCCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGTCACGGAGGGGGAAGTCATCTCCCTGGGGCTG
CCCTTTGGGAAGGTCACCAACCTCCTGATGCTGAAGGGGAAAAACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGC
CAACACCATGGTGAACTACTACACCTCGGTGACCCCTGTGCTGCGCGGCCAGCCCATCTACATCCAGTTCTCCAACCACA
AGGAGCTGAAGACCGACAGCTCTCCCAACCAGGCGCGGGCCCAGGCGGCCCTGCAGGCGGTGAACTCGGTCCAGTCGGGG
AACCTGGCCTTGGCTGCCTCGGCGGCGGCCGTGGACGCAGGGATGGCGATGGCCGGACAGAGCCCCGTGCTCAGGATCAT
CGTGGAGAACCTCTTCTACCCTGTGACCCTGGATGTGCTGCACCAGATTTTCTCCAAGTTCGGCACAGTGTTGAAGATCA
TCACCTTCACCAAGAACAACCAGTTCCAGGCCCTGCTGCAGTATGCGGACCCCGTGAGCGCCCAGCACGCCAAGCTGTCG
CTGGACGGGCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAAGTA
CAACAATGACAAGAGCCGCGACTACACACGCCCAGACCTGCCTTCCGGGGACAGCCAGCCCTCGCTGGACCAGACCATGG
CCGCGGCCTTCGGTGCACCTGGTATAATCTCAGCCTCTCCGTATGCAGGAGCTGGTTTCCCTCCCACCTTTGCCATTCCT
CAAGCTGCAGGCCTTTCCGTTCCCAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGCAGCTGC
GGCGGCAGGCCGGATCGCCATCCCGGGCCTGGCGGGGGCAGGAAATTCTGTATTGCTGGTCAGCAACCTCAACCCAGAGA
GAGTCACACCCCAAAGCCTCTTTATTCTTTTCGGCGTCTACGGTGACGTGCAGCGCGTGAAGATCCTGTTCAATAAGAAG
GAGAACGCCCTAGTGCAGATGGCGGACGGCAACCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCACGG
GAAGCCCATCCGCATCACGCTCTCGAAGCACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACCAGGGCCTGACCA
AGGACTACGGCAACTCACCCCTGCACCGCTTCAAGAAGCCGGGCTCCAAGAACTTCCAGAACATATTCCCACCTTCGGCC
ACGCTGCACCTCTCCAACATCCCGCCCTCAGTCTCCGAGGAGGATCTCAAGGTCCTGTTTTCCAGCAATGGGGGCGTCGT
CAAAGGATTCAAGTTCTTCCAGAAGGACCGCAAGATGGCGCTGATCCAGATGGGCTCCGTGGAGGAGGCGGTCCAGGCCC
TCATTGACCTGCACAACCACGACCTCGGGGAGAACCACCACCTGCGGGTCTCCTTCTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 23 .34 RPM
SRP007412_cerebellum 39 .29 RPM
SRP007412_heart 27 .48 RPM
SRP007412_kidney 168 .44 RPM
SRP007412_liver 168 .68 RPM
SRP007412_testis 33 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020162 ortholog_one2one 1 retrogene
retro_cjac_1901,
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Equus caballus ENSECAG00000018845 ortholog_one2one 1 retrogene
retro_ecab_330,
Echinops telfairi ENSETEG00000006890 ortholog_one2many 1 retrogene
retro_etel_1573,
Homo sapiens ENSG00000011304 ortholog_one2one 1 retrogene
retro_hsap_1354,
Gorilla gorilla ENSGGOG00000005090 ortholog_one2one 1 retrogene
retro_ggor_1054,
Macropus eugenii ENSMEUG00000006710 ortholog_one2one 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2one 1 retrogene
retro_mluc_755,
Nomascus leucogenys ENSNLEG00000000864 ortholog_one2one 1 retrogene
retro_nleu_1834,
Pongo abelii ENSPPYG00000009289 ortholog_one2one 1 retrogene
retro_pabe_1122,
Pan troglodytes ENSPTRG00000010941 within_species_paralog 1 retrogene
retro_ptro_1043,
Rattus norvegicus ENSRNOG00000010448 possible_ortholog 2 retrogenes
retro_rnor_1994, retro_rnor_2478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_928 86.05 53.32
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Download FASTA sequences of all ENSPTRG00000010165 retrocopies