Parental gene:

PTBP1, ENSPPYG00000009289

Aliases:None
Description:polypyrimidine tract binding protein 1 [Source:HGNC Symbol;Acc:9583]
Organism:Orangutan (Pongo abelii)
Coordinates:19:637160..650347(+)


>ENSPPYG00000009289
ATGGACGGCATTGTCCCAGATATAGCCGTTGGTACAAAGCGGGGATCTGACGAGCTTTTCTCTACTTGTGTCACTAACGG
ACCGTTTATCATGAGCAGCAACTCGGCCTCTGCAGCAAACGGAAATGACAGCAAGAAGTTCAAAGGTGACAGCAGAAGCG
CCGGCGTCCCCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGTCACAGAAGGGGAAGTCATCTCCCTGGGGCTG
CCCTTTGGGAAGGTCACCAACCTCCTGATGCTGAAGGGGAAAAACCAGGCCTTCATCGAGATGAACACGGAGGAGGCTGC
CAACACCATGGTCAACTACTACACCTCGGTGACACCCGTGCTGCGCGGCCAGCCCATCTACATCCAGTTCTCCAACCACA
AGGAGCTGAAGACCGACAGCTCCCCCAACCAGGCGCGGGCCCAGGCGGCCCTGCAGGCTGTGAACTCGGTCCAGTCGGGG
AACCTGGCCTTGGCTGCCTCGGCGGCGGCCGTGGACGCAGGGATGGCGATGGCGGGGCAGAGCCCCGTGCTCAGGATCAT
CGTGGAGAACCTCTTCTACCCTGTGACCCTGGATGTGCTGCACCAGATTTTCTCCAAGTTTGGCACAGTGTTGAAAATTA
TCACCTTCACCAAGAACAACCAGTTCCAGGCCCTGCTGCAGTATGCGGACCCCGTGAGCGCCCAGCACGCCAAGCTGTCG
CTGGACGGGCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAAGTA
CAACAATGACAAGAGCCGCGACTACACGCGCCCAGACCTGCCCTCCGGGGACAGCCAGCCCTCGATCTCAGCCTCTCCGT
ATGCAGGAGCTGGTTTCCCTCCCACCTTTGCCATTCCTCAAGCTGCAGGCCTTTCCGTTCCCAACGTCCATGGAGCCCTG
GCCCCCCTGGCCATCCCCTCGGCGGCGGCAGCAGCTGCAGCAGCAGGCCGGATCGCCATCCCGGGCCTGGCGGGGGCGGG
AAATTCTGTATTGCTGGTCAGCAACCTCAACCCAGAGAGAGTCACACCCCAAAGCCTCTTTATTCTTTTCGGCGTCTACG
GCGACGTGCAGCGCGTGAAGATCCTGTTCAATAAGAAGGAGAACGCTCTGGTGCAGATGGCGGACGGCAACCAGGCCCAG
CTGGCTATGAGCCACCTGAACGGGCACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCAAAGCACCAGAACGTGCA
GCTGCCCCGCGAGGGCCAGGAGGACCAGGGCCTGACCAAGGACTATGGCAACTCACCCCTGCACCGCTTCAAGAAGCCGG
GCTCCAAGAACTTCCAGAACATATTCCCGCCCTCGGCCACACTGCACCTCTCCAACATCCCGCCCTCAGTCTCCGAGGAG
GATCTCAAGGTCCTGTTTTCCAGCAATGGGGGCGTCGTCAAAGGATTCAAGTTCTTCCAGAAGGACCGCAAGATGGCGCT
GATCCAGATGGGCTCCGTGGAGGAGGCGGTCCAGGCCCTCATTGACCTGCACAACCACGACCTCGGGGAGAACCACCACC
TGCGGGTCTCCTTCTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .49 RPM
SRP007412_cerebellum 14 .47 RPM
SRP007412_heart 9 .33 RPM
SRP007412_kidney 62 .61 RPM
SRP007412_liver 32 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020162 ortholog_one2one 1 retrogene
retro_cjac_1901,
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Equus caballus ENSECAG00000018845 ortholog_one2one 1 retrogene
retro_ecab_330,
Echinops telfairi ENSETEG00000006890 ortholog_one2many 1 retrogene
retro_etel_1573,
Homo sapiens ENSG00000011304 ortholog_one2one 1 retrogene
retro_hsap_1354,
Gorilla gorilla ENSGGOG00000005090 ortholog_one2one 1 retrogene
retro_ggor_1054,
Macropus eugenii ENSMEUG00000006710 ortholog_one2one 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2one 1 retrogene
retro_mluc_755,
Nomascus leucogenys ENSNLEG00000000864 ortholog_one2one 1 retrogene
retro_nleu_1834,
Pongo abelii ENSPPYG00000009945 within_species_paralog 2 retrogenes
retro_pabe_1282, retro_pabe_3576,
Pan troglodytes ENSPTRG00000010165 ortholog_one2one 1 retrogene
retro_ptro_928,
Rattus norvegicus ENSRNOG00000010448 possible_ortholog 2 retrogenes
retro_rnor_1994, retro_rnor_2478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1122 84.30 53.22
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Download FASTA sequences of all ENSPPYG00000009289 retrocopies