RetrogeneDB ID: retro_mluc_755

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:14789607..14790413(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PTBP1
• Ensembl ID: ENSMLUG00000003320
• Aliases: None
• Description: None

Sequence

>retro_mluc_755
TATCTGAGCAGTAGCAACTCAGTCTCTGCAGCAAATGGAAATGACAACAAGAAGTTCAAAGGTGACAACAGAAGTGCAGG
CTTGTCTTCCAGAGTGATTCGCATCTGGAAGCTTCCCAGTGATGTCACTGAGGGCGAGGTCATTTCCCTGGGACTGCCCT
TTGGGAAGGTCACCATTTCCTGATGCTGAAAGGGAAAAAACAGGTCTTCATTAAGAAAAACATGGAGGAGGCAGCCAACA
CCATGGTGAACTACACCTTGGTGACACCCAAGCATCTTGGCCAGCCAATCTATATCCAGTTCTCCAACAACAAGGAGCTG
AAGACGCACAGCTCACCCAACTAGGTACAGGCCCAGGCAGCCTTGCAGGCGGTGAACTGTGATCAGTCCGGAACCTGGCA
CTTGCTGCCTCGGTCCTGGCTATGGATGCTGGGATGGTGATGGCTGGCCAGAGAATGGTGCTCAGGATCATTGTGGAGCC
CTTCTTCAACTCAATAACCCTGGACGTGCTTCACCAGATCTTCTCCAAGTTTGGCATAGTTCTGAAAATCATCACTCTCA
CCAAGAACAACCAGTTCCAGGCACTGCTGCAGTATGCCAAACCATGAGTGCCCAGAAGGCTAAGCTGTCACAGGACAGGC
AGAACATCTACAATGCTTGCACAAACTCCATATATACTTTTCTCCTCTCACCAGCCTCAATGTCAAGTACAACAATGACA
AGAGCCGAGTCTACACCACTCCTACCCTGCCCTCTAGTGACAGCCATGCCTCACTGGATCAGACCATGGCCCCGGCCATG
GGCCTT

Alignment

ORF - retro_mluc_755 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.36 %
• Parental protein coverage: 51.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  FIMSSNSASAANGNDSKKFKGDNRSTGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVT-NLLMLKGKNQA
          ...SSNS.SAANGND.KKFKGDNRS.G..SRVI.I.KLPSDVTEGEVISLGLPFGKVT...LMLKGK.Q.
Retrocopy YLSSSNSVSAANGNDNKKFKGDNRSAGLSSRVIRIWKLPSDVTEGEVISLGLPFGKVT<HFLMLKGKKQV

Parental  FIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSG-NLSLAA
          FI..N.EEAANTMVNY.T.VTP...GQPIYIQFSN.KELKT.SSPN...AQAALQAVN..QSG.NL.LAA
Retrocopy FIKKNMEEAANTMVNY-TLVTPKHLGQPIYIQFSNNKELKTHSSPN*VQAQAALQAVNCDQSG<NLALAA

Parental  SAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEP-VSAQ
          S..A.DAGM.MAGQ..VLRIIVE..F...TLDVLHQIFSKFG.VLKIIT.TKNNQFQALLQYA.P..SAQ
Retrocopy SVLAMDAGMVMAGQRMVLRIIVEPFFNSITLDVLHQIFSKFGIVLKIITLTKNNQFQALLQYAKP<MSAQ

Parental  HAKLSLDGQNIYNACCT-LRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL
          .AKLS.D.QNIYNAC...L.I.FS.LTSLNVKYNNDKSR.YT.P.LPS.DS..SLDQTMA.A.GL
Retrocopy KAKLSQDRQNIYNACTN<LHIYFSPLTSLNVKYNNDKSRVYTTPTLPSSDSHASLDQTMAPAMGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_755 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020162	1 retrocopy	retro_cjac_1901,
Ciona savignyi	ENSCSAVG00000007421	1 retrocopy	retro_csav_17,
Dasypus novemcinctus	ENSDNOG00000000882	1 retrocopy	retro_dnov_982,
Equus caballus	ENSECAG00000018845	1 retrocopy	retro_ecab_330,
Echinops telfairi	ENSETEG00000006890	1 retrocopy	retro_etel_1573,
Homo sapiens	ENSG00000011304	1 retrocopy	retro_hsap_1354,
Gorilla gorilla	ENSGGOG00000005090	1 retrocopy	retro_ggor_1054,
Macropus eugenii	ENSMEUG00000006710	2 retrocopies	retro_meug_1447, retro_meug_67,
Myotis lucifugus	ENSMLUG00000003320	1 retrocopy	retro_mluc_755 ,
Mus musculus	ENSMUSG00000006498	1 retrocopy	retro_mmus_1072,
Nomascus leucogenys	ENSNLEG00000000864	1 retrocopy	retro_nleu_1834,
Pongo abelii	ENSPPYG00000009289	1 retrocopy	retro_pabe_1122,
Pan troglodytes	ENSPTRG00000010165	1 retrocopy	retro_ptro_928,
Rattus norvegicus	ENSRNOG00000010448	2 retrocopies	retro_rnor_1994, retro_rnor_2478,