Parental gene:

ENSCSAVG00000007421

Aliases:None
Description:None
Organism:Pacific transparent sea squirt (Ciona savignyi)
Coordinates:reftig_20:1181572..1196974(-)


>ENSCSAVG00000007421
AGCCAAGTGTCAAAGGTTGTGCACCTACGCTCCCTGCCGAGTGATGTCACCGATAATGAAGTAATCCAGCTTGGCTTGTC
GTACGGTCATGTGACCAATGTGCTGATGCTAAAAGGAAAGAACCAGGCTTTCCTTGAGATGGAAGACGAAGAGATAGCGA
ACCAGATGGTGAGTAGCAGTGGCTTGAATCCACCAACCATCCGGCAACGCATCATCTACGTTCAGTTCTCGAACCACAAG
GAACTGAAGACAGACAGCTCCCCAAATCAGCTGTCTGTGATGATTCTGTGTTGTTGTTTACAATCCCAAACGGACTTCCC
CACTTTCACCATTGTTGCTTGTTTGGCACTTCCCGGCCAAATGATCTCATGTCCCGCCTTTGTTTTCTCGATCTTGCAAG
CAATGCAAAAGAGAGAGGGCGGACCGAACCATGTCCTCAGGGCTGTCATCGAGAATATGTTGTACCCAATTACATTAGAC
GTGCTACATACCATCTTCTCTAAGTTTGGGGTTATCCTTAAAATTATCACCTTCACCAAAAGCAGTCAATTTCAAGCTTT
GATCCAGATGGCTGATGCACTGCAGTCTCAGACAGCCAAGCTGTCGTTGGACGGCCAAAACATCTACAACGGGTGCTGCA
CATTGAGGATCGAATACAGCAAACTATCAGCACTCAACGTCAAGTTCAACAACGATAAAAGTCGAGATTACACACGGAAT
GACCTCCCCACCGGAGAGCCTACTTCCATATTAGGCACCGGGAACGCACTGCATTCCATGCTCGGAGGTAACTTGACACA
AACAAACCAAACACTAAATCTCAAAAGCCAAGCAATCGGATATACATGTGATCCCAACCACCCACATATCCCCCCATCCC
AACCATCCACAGGTGCTCTCCATCATCTCACAGGGACAGGAATGCCGGGATCATCGACGCAGATGGTGACGCAGCTCGCA
GCCATCGTTGGTGGAGGGCAGACCTCTGTGTTACATGTGTCCAACCTCAATGAAGAGATGGTCACCCCTGAAGTTCTCTT
TCTTCTGTTCGGGGTATATGGTGATGTGAACAGAGTGAAGATTATGTATCAGAAGAAAAGCAACGCACTAGTTCAAATGA
ATGACAACAACCAAGCACAAAATGTGATCAGATTCCTTGATGGCGTGAAATTGTACGACAGACCTCTACAAATCACCTTG
TCTCGTCACAACCAAGTGCAGATGCCAAGAGAAGGACAGGAAATGGCAAAGCTTACTCAGGATTACACCAACTCTCCTCT
TCACCGCTTCAAAAAGCCAGGATCGAAAAATTTCCAAAATATTTTCGCTCCATCTGAAGTCCTTCATCTCTCCAACATCC
CACCTGAAACTACTGAGGAATTTCTTCGTGAGAAATTTGAGGAGTTCGGTGGCGTTGTCGGCTTCAAGTTCTTTGTGAAA
GACAGAAGAATGGCTCTGATACAGATGTCTTCATTAGAAGAAGCTATCATCTGTCTAGTGACTTTGCACAATCTCAAACT
GGGAGAATCCAACCATCTACGCGTATCGTTTTCTAAAGGTCACATC

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002039 ortholog_one2many 2 retrogenes
retro_chof_1487, retro_chof_2474,
Callithrix jacchus ENSCJAG00000020162 ortholog_one2many 1 retrogene
retro_cjac_1901,
Dasypus novemcinctus ENSDNOG00000000882 ortholog_one2many 1 retrogene
retro_dnov_982,
Equus caballus ENSECAG00000018845 ortholog_one2many 1 retrogene
retro_ecab_330,
Echinops telfairi ENSETEG00000006890 ortholog_one2many 1 retrogene
retro_etel_1573,
Homo sapiens ENSG00000011304 ortholog_one2many 1 retrogene
retro_hsap_1354,
Gorilla gorilla ENSGGOG00000005090 ortholog_one2many 1 retrogene
retro_ggor_1054,
Loxodonta africana ENSLAFG00000011358 ortholog_one2many 1 retrogene
retro_lafr_1050,
Macropus eugenii ENSMEUG00000006710 ortholog_one2many 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2many 1 retrogene
retro_mluc_755,
Mus musculus ENSMUSG00000006498 ortholog_one2many 1 retrogene
retro_mmus_1072,
Nomascus leucogenys ENSNLEG00000000864 ortholog_one2many 1 retrogene
retro_nleu_1834,
Pongo abelii ENSPPYG00000009289 ortholog_one2many 1 retrogene
retro_pabe_1122,
Pan troglodytes ENSPTRG00000010165 ortholog_one2many 1 retrogene
retro_ptro_928,
Rattus norvegicus ENSRNOG00000010448 ortholog_one2many 2 retrogenes
retro_rnor_1994, retro_rnor_2478,
Tupaia belangeri ENSTBEG00000010797 ortholog_one2many 1 retrogene
retro_tbel_570,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_csav_17 67.99 57.29
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Download FASTA sequences of all ENSCSAVG00000007421 retrocopies