Parental gene: | RBMX, ENSPPYG00000020771 |
| Aliases: | None |
| Description: | RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | X:136372550..136380274(-) |
>ENSPPYG00000020771
ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGT
ATTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTG
TCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGCCATCAAG
GTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACCTCCAAGAAGTAGAGGCCCTCCAAG
AGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCTCACGGGGAGGACACATGGATGATGGTGGAT
ATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACCACCACCAAGAAGTGGGGGTCCT
CCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGGGAGGAAGAGCTCCTGTATCACGTGGAAG
AGATAGTTATGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGT
ATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGAT
TATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGCTATAGCGATAGAGATGGATATGG
TCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTAGTG
CTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATAT
GGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAG
AGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAG
GTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAG
ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGT
ATTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTG
TCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGCCATCAAG
GTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACCTCCAAGAAGTAGAGGCCCTCCAAG
AGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCTCACGGGGAGGACACATGGATGATGGTGGAT
ATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACCACCACCAAGAAGTGGGGGTCCT
CCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGGGAGGAAGAGCTCCTGTATCACGTGGAAG
AGATAGTTATGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGT
ATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGAT
TATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGCTATAGCGATAGAGATGGATATGG
TCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTAGTG
CTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATAT
GGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAG
AGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAG
GTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 25 .27 RPM |
| SRP007412_cerebellum | 34 .53 RPM |
| SRP007412_heart | 28 .21 RPM |
| SRP007412_kidney | 34 .37 RPM |
| SRP007412_liver | 19 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000013308 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000018962 | ortholog_one2one | 4 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000012369 | possible_ortholog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000012164 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000017199 | possible_ortholog | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000015481 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000013178 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000004779 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006944 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000005568 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013209 | possible_ortholog | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000014054 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000001855 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031134 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007220 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007839 | possible_ortholog | 5 retrogenes | |
| Ochotona princeps | ENSOPRG00000016593 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000017728 | within_species_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000020314 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000866 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000000397 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001154 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000009555 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000007322 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_303 | 94.87 | 99.74 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_766 | 72.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2548 | 85.67 | 90.28 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000020771 retrocopies