RetrogeneDB ID:

retro_mputfur_956

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896981.1:599002..600180(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RBMX
Ensembl ID:ENSMPUG00000001855
Aliases:None
Description:RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910]


Retrocopy-Parental alignment summary:






>retro_mputfur_956
AAATTAGTTGAACCAGATCACCCAGGAAAGCTCTGCATTGGTGGCCTGAAACAGAAACAAATAAGGAAGCCCTTGAAGTC
ATATTTGGCAAATATGGACAAATAATAGAAGTTCTATTGATGAAAGATCATGAAACTAACAAATCAAGAGCATTTGCTTT
TGTCATGTTTGAAAGCCCAGCTGAAGCTAAAGGATACAGCCAAAGATGTGAACAGAAAGTCCTTAGATGGAAAAGCCATT
AAGGTAGAACAAGCCACTGAGCCATCATTTGGAAGTGGTAGATATGGACCACCTTCACCTCTAAGAAGCAGAAGCCCTCC
AAAAGGTCTTAGAGCTGGAAGAAGATGAAGTGGAGGAACCAAGGGGACCTCCCTCATGCAAAAGGCCTATGGATCATGGT
GGCTATTCTGTGATTTTTAATATAAATTCTTCCAAGGGACCACTTCCAATAAAAAGGGGACCACTACCCCAAAGTGGCTG
TCCTCCTCCTAAAAGATATGCCCCTTCAGGACAAGTTCATATCAACAATGGAATGGAAGGTAAAGCTCCTGTACAACATG
GAAGAGATAGTTAGGGAGGCAAAACTTGAAAGAAACCCCTGCCCTCTCATAGGGATGTTTATTTGTCCCCAAAAGATGAT
GGGTATTCTACTAAAGATAGTTATTCAATGAGAGATTTCCCAAGTTCTTGTGATACCAGAGATTAAGTACTACCACCAAG
AAGATTATACTTACTGTGATTATGGTCATTCCAGTTCACATGATGATTACCCATCAAGAGGCTGTAGTATTAGAGATGAC
TATGGTCCTGATCTTAACTATTTAGATCATACAAGTGGAAGTTCCTATGGAGATTGATATGAGAGTTATGGTAACTCACT
TAGTGCTCTAACTACATGAGGACCCCTGCCATCTTGTAGGGGAAACAGTCACTGTGATGATTACAGCAGCTCATATGATG
GGTATGGTGGAAGTCAAGACAGTTACTCAGGCAGTGGAAGTGATCTCTACTCACGTGGTCATGATCTGGCTGGCAGACAA
GAAAGAGGCCTTCCCCCTTCTGTGGAAAAGAAGGTATCCTCCTCCATGTGATTCCTACACCACTTCAATTCACAGAGCAC
CCAGAGGTGGAAGCTATGGAGGAAGCTGATCTGACAGAGGTGAGGCAGAAGCAGATAT

ORF - retro_mputfur_956 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.85 %
Parental protein coverage: 100. %
Number of stop codons detected: 7
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalKMVEADRPGKLFIGGLN-TETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK-DAAR
K.VE.D.PGKL.IGGL..TETN..ALE..FGKYG.I.EVLLMKD.ETNKSR.FAFV.FESPA.AK.D.A.
RetrocopyKLVEPDHPGKLCIGGLK<TETNKEALEVIFGKYGQIIEVLLMKDHETNKSRAFAFVMFESPAEAK>DTAK
ParentalDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGT-RGPPSRGGHMDDGGYSM
D.N.KSLDGKAIKVEQAT.PSF.SGR.GPP.P.RSR.PP.GLR.GR..SGGT.RGPPS....MD.GGYS.
RetrocopyDVNRKSLDGKAIKVEQATEPSFGSGRYGPPSPLRSRSPPKGLRAGRR*SGGT>RGPPSCKRPMDHGGYSV
ParentalNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVY
.FN..SS.GPLP.KRGP.P.SG.PPPKR.APSG.V....GM.G.APV..GRDS.GG.....PLPS.RDVY
RetrocopyIFNINSSKGPLPIKRGPLPQSGCPPPKRYAPSGQVHINNGMEGKAPVQHGRDS*GGKT*KKPLPSHRDVY
ParentalLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR-DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDH
LSP.DDGYSTKDSYS.RD.PSS.DTRD...PPR.DYTY.DYGHSSS.DDYPSRG.S.RD.YG.D..Y.DH
RetrocopyLSPKDDGYSTKDSYSMRDFPSSCDTRD*VLPPR>DYTYCDYGHSSSHDDYPSRGCSIRDDYGPDLNYLDH
ParentalPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQ
.SG.SY.D.YESYGNS.SA..T.GP.PS..G.S..DDYSSS.DGYGGS.DSYS.S.SDLYS.G.D..GRQ
RetrocopyTSGSSYGD*YESYGNSLSALTT*GPLPSCRGNSHCDDYSSSYDGYGGSQDSYSGSGSDLYSRGHDLAGRQ
ParentalERGLPPSME-RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGG-GRSRY
ERGLPPS.E.R.YPPP.DSY..S...APRGG..GGS.SDRG..GRSRY
RetrocopyERGLPPSVE>RRYPPPCDSYTTSIHRAPRGGSYGGS*SDRGE<GRSRY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_956 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_956 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 28 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000133081 retrocopy
retro_btau_36,
Canis familiaris ENSCAFG000000189624 retrocopies
retro_cfam_1106, retro_cfam_1244, retro_cfam_1649, retro_cfam_1914,
Choloepus hoffmanni ENSCHOG000000123693 retrocopies
retro_chof_1240, retro_chof_2596, retro_chof_880,
Cavia porcellus ENSCPOG000000121641 retrocopy
retro_cpor_778,
Dasypus novemcinctus ENSDNOG000000171993 retrocopies
retro_dnov_1436, retro_dnov_2205, retro_dnov_696,
Dipodomys ordii ENSDORG000000154811 retrocopy
retro_dord_793,
Echinops telfairi ENSETEG000000131781 retrocopy
retro_etel_1952,
Felis catus ENSFCAG000000047791 retrocopy
retro_fcat_1903,
Homo sapiens ENSG000001472747 retrocopies
retro_hsap_23, retro_hsap_3074, retro_hsap_3587, retro_hsap_4144, retro_hsap_4846, retro_hsap_800, retro_hsap_91,
Gorilla gorilla ENSGGOG000000069441 retrocopy
retro_ggor_657,
Loxodonta africana ENSLAFG000000055683 retrocopies
retro_lafr_1188, retro_lafr_276, retro_lafr_35,
Microcebus murinus ENSMICG000000068562 retrocopies
retro_mmur_1252, retro_mmur_661,
Myotis lucifugus ENSMLUG000000132095 retrocopies
retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Monodelphis domestica ENSMODG000000140541 retrocopy
retro_mdom_1231,
Mustela putorius furoENSMPUG00000001855 2 retrocopies
retro_mputfur_1539, retro_mputfur_956 ,
Mustela putorius furoENSMPUG000000031571 retrocopy
retro_mputfur_673,
Mustela putorius furoENSMPUG000000134801 retrocopy
retro_mputfur_1442,
Mus musculus ENSMUSG000000311342 retrocopies
retro_mmus_170, retro_mmus_187,
Oryctolagus cuniculus ENSOCUG000000072201 retrocopy
retro_ocun_3,
Otolemur garnettii ENSOGAG000000078395 retrocopies
retro_ogar_1057, retro_ogar_137, retro_ogar_1586, retro_ogar_2445, retro_ogar_2584,
Ochotona princeps ENSOPRG000000165931 retrocopy
retro_opri_372,
Pongo abelii ENSPPYG000000207713 retrocopies
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Rattus norvegicus ENSRNOG000000008661 retrocopy
retro_rnor_268,
Sorex araneus ENSSARG000000003971 retrocopy
retro_sara_169,
Ictidomys tridecemlineatus ENSSTOG000000062112 retrocopies
retro_itri_1205, retro_itri_1346,
Tupaia belangeri ENSTBEG000000011541 retrocopy
retro_tbel_1919,
Tarsius syrichta ENSTSYG000000095551 retrocopy
retro_tsyr_15,
Tursiops truncatus ENSTTRG000000073221 retrocopy
retro_ttru_1450,




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