RetrogeneDB ID:

retro_mluc_1630

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429875:1893576..1894247(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000029734
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000013209
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1630
TCTGCTCCTTCAAGACCAGATCCCAGCAACAGTGGAATGGGAAGAAGGGCTCCCCATCACGTGGAAGAGATGGTAATGAA
GGCCCACCTCGAAGGCACCCCGCCTTCTGGTACAGATGTTTATTTGTTCCCAAGAGAGGATAGATATTCTACTAAAGACA
GCTATTCACACAGAGATTATCCAAATTCTCGTGATACAAGAGATTATGCGCCACCACTGAGAGATTATACTTATCATGAT
TATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGCTATAGCGATAGAGATGGCTACGGTTGTGATCATGACTA
TTCAGATCATTCAAGTGGTGGTTCCTGCAGGGATCCACATGACAGGTATGGTAACTCACATGGTGCTCCACCTACAGGAG
GGTCCCATCATTTTACGGTGGAAAGCAGTCGCTGTGATGACTACAGCAGCTGTGGTGGAAGTTGAGACAGTTACTTAAGC
AGCCGAAGTGATCTCTACTCACATGGTCATGATCGGGTTGGCAGATAAAACAGAGGGCTTCCCCCTTCAATGGAAAGGGG
CAGGGGGACCCTCCTCCACCTGATTCCTACAGCATTTCAAGCTACCCAGCACCAACTGGTGGTGGCCCTGCAGGAAGCTG
ATCTGACAGAAGGGGAGGCAGAAGCAGATAT

ORF - retro_mluc_1630 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.66 %
Parental protein coverage: 58.06 %
Number of stop codons detected: 3
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalSAPSGPVRSSSGMGGRAP-VSRGRDSYGG-PPRREPL-PSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDT
SAPS.P..S.SGMG.RAP..SRGRD...G.P....P..PS..DVYL.PR.D.YSTKDSYS.RDYP.SRDT
RetrocopySAPSRPDPSNSGMGRRAP<PSRGRDGNEG<PTSKAPR<PSGTDVYLFPREDRYSTKDSYSHRDYPNSRDT
ParentalRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYDSYGNSRSAPPTRGP-
RDYAPP.RDYTY.DYGHSSSRDDYPSRGYSDRDGYG.D.DYSDH.SGGS.RD..D.YGNS..APPT.G..
RetrocopyRDYAPPLRDYTYHDYGHSSSRDDYPSRGYSDRDGYGCDHDYSDHSSGGSCRDPHDRYGNSHGAPPTGGS<
ParentalPPSYGG-SSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMER-GYPPPRDSYSSSS
P..YGG.SSR.DDYSS.....GGS.DSY.SSRSDLYS.G.DRVGR..RGLPPSMER.G...P....S.S.
RetrocopyPSFYGG>SSRCDDYSSC----GGS*DSYLSSRSDLYSHGHDRVGR*NRGLPPSMER<GQGDPPPPDSYSI
ParentalRGAPRGGGRGGSRS--DRGGGRSRY
...P...G.G...S..DR.GGRSRY
RetrocopySSYPAPTGGGPAGS*SDRRGGRSRY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1630 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 29 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000133081 retrocopy
retro_btau_36,
Canis familiaris ENSCAFG000000189624 retrocopies
retro_cfam_1106, retro_cfam_1244, retro_cfam_1649, retro_cfam_1914,
Choloepus hoffmanni ENSCHOG000000123693 retrocopies
retro_chof_1240, retro_chof_2596, retro_chof_880,
Cavia porcellus ENSCPOG000000121641 retrocopy
retro_cpor_778,
Dasypus novemcinctus ENSDNOG000000171993 retrocopies
retro_dnov_1436, retro_dnov_2205, retro_dnov_696,
Dipodomys ordii ENSDORG000000154811 retrocopy
retro_dord_793,
Echinops telfairi ENSETEG000000131781 retrocopy
retro_etel_1952,
Felis catus ENSFCAG000000047791 retrocopy
retro_fcat_1903,
Homo sapiens ENSG000001472747 retrocopies
retro_hsap_23, retro_hsap_3074, retro_hsap_3587, retro_hsap_4144, retro_hsap_4846, retro_hsap_800, retro_hsap_91,
Gorilla gorilla ENSGGOG000000069441 retrocopy
retro_ggor_657,
Loxodonta africana ENSLAFG000000055683 retrocopies
retro_lafr_1188, retro_lafr_276, retro_lafr_35,
Microcebus murinus ENSMICG000000068562 retrocopies
retro_mmur_1252, retro_mmur_661,
Myotis lucifugus ENSMLUG000000039961 retrocopy
retro_mluc_1013,
Myotis lucifugus ENSMLUG000000057812 retrocopies
retro_mluc_2565, retro_mluc_2567,
Myotis lucifugus ENSMLUG00000013209 5 retrocopies
retro_mluc_1630 , retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Myotis lucifugus ENSMLUG000000150071 retrocopy
retro_mluc_1975,
Monodelphis domestica ENSMODG000000140541 retrocopy
retro_mdom_1231,
Mustela putorius furoENSMPUG000000018552 retrocopies
retro_mputfur_1539, retro_mputfur_956,
Mus musculus ENSMUSG000000311342 retrocopies
retro_mmus_170, retro_mmus_187,
Oryctolagus cuniculus ENSOCUG000000072201 retrocopy
retro_ocun_3,
Otolemur garnettii ENSOGAG000000078395 retrocopies
retro_ogar_1057, retro_ogar_137, retro_ogar_1586, retro_ogar_2445, retro_ogar_2584,
Ochotona princeps ENSOPRG000000165931 retrocopy
retro_opri_372,
Pongo abelii ENSPPYG000000207713 retrocopies
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Rattus norvegicus ENSRNOG000000008661 retrocopy
retro_rnor_268,
Sorex araneus ENSSARG000000003971 retrocopy
retro_sara_169,
Ictidomys tridecemlineatus ENSSTOG000000062112 retrocopies
retro_itri_1205, retro_itri_1346,
Tupaia belangeri ENSTBEG000000011541 retrocopy
retro_tbel_1919,
Tarsius syrichta ENSTSYG000000095551 retrocopy
retro_tsyr_15,
Tursiops truncatus ENSTTRG000000073221 retrocopy
retro_ttru_1450,




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