Parental gene:

TRA2A, ENSPPYG00000017728

Aliases:None
Description:transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645]
Organism:Orangutan (Pongo abelii)
Coordinates:7:60900555..60930498(+)


>ENSPPYG00000017728
ATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCG
TGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCGTCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGAT
CAAAATCCAGGTCGAGGTCAAGGAGACATTCTCATAGACGTTACACTCGATCCAGATCCCACTCTCACTCTCATAGGAGA
CGATCTCGAAGTAGATCATATACACCAGAATACCGGCGGCGAAGGAGCCGAAGCCATTCTCCAATGTCTAACCGGAGAAG
ACATACTGGCAGCAGGGCAAATCCAGATCCCAACACTTGCCTTGGAGTGTTTGGCCTCAGTTTGTACACAACAGAGAGAG
ATCTTCGTGAAGTATTTTCTCGATATGGACCATTGAGTGGTGTCAATGTGGTTTATGATCAGCGAACTGGGCGATCTCGA
GGATTTGCTTTTGTGTATTTTGAGAGAATAGATGACTCAAAGGAGGCTATGGAAAGGGCAAATGGAATGGAGCTGGATGG
TAGAAGAATTCGGGTGGATTATTCTATCACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGCAGACCAACTC
ATAGTGGTGGTGGTGGTGGAGGCGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTCGAGATTCTTACTATGATAGA
GGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGGTACAGAAGACGATCACCTTCTCCTTATTATAGTCG
ATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAAGACGCTATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 37 .43 RPM
SRP007412_cerebellum 65 .66 RPM
SRP007412_heart 23 .24 RPM
SRP007412_kidney 34 .11 RPM
SRP007412_liver 30 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001130 ortholog_one2one 1 retrogene
retro_chof_974,
Callithrix jacchus ENSCJAG00000001509 ortholog_one2one 1 retrogene
retro_cjac_1759,
Echinops telfairi ENSETEG00000007250 ortholog_one2one 2 retrogenes
retro_etel_323, retro_etel_692,
Homo sapiens ENSG00000164548 ortholog_one2one 1 retrogene
retro_hsap_386,
Gorilla gorilla ENSGGOG00000009053 ortholog_one2one 1 retrogene
retro_ggor_391,
Mustela putorius furo ENSMPUG00000013480 ortholog_one2one 1 retrogene
retro_mputfur_1442,
Nomascus leucogenys ENSNLEG00000014794 ortholog_one2one 1 retrogene
retro_nleu_1481,
Otolemur garnettii ENSOGAG00000009733 ortholog_one2one 3 retrogenes
retro_ogar_1966, retro_ogar_2558, retro_ogar_3027,
Pongo abelii ENSPPYG00000020314 within_species_paralog 1 retrogene
retro_pabe_40,
Pongo abelii ENSPPYG00000020771 within_species_paralog 3 retrogenes
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Pan troglodytes ENSPTRG00000018988 ortholog_one2one 1 retrogene
retro_ptro_299,
Sorex araneus ENSSARG00000012900 ortholog_one2one 1 retrogene
retro_sara_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_324 81.52 74.47
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Download FASTA sequences of all ENSPPYG00000017728 retrocopies