Parental gene:

TRA2A, ENSG00000164548

Aliases:TRA2A, AWMS1, HSU53209
Description:transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645]
Organism:Human (Homo sapiens)
Coordinates:7:23544398..23571660(-)


>ENSG00000164548
ATGAGTGATGTGGAGGAAAACAACTTCGAGGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCG
TGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGAT
CAAAATCCAGGTCGAGGTCAAGGAGACATTCTCATAGACGTTACACTCGATCCAGATCCCACTCTCACTCTCATAGGAGA
CGATCTCGAAGTAGATCATATACACCAGAATACCGGCGGCGAAGGAGCCGAAGCCATTCTCCAATGTCTAACCGGAGAAG
ACATACTGGCAGCAGGGCAAATCCAGATCCCAACACTTGCCTTGGAGTGTTTGGCCTCAGTTTGTACACAACAGAGAGGG
ATCTTCGTGAAGTATTTTCTCGATATGGACCATTGAGTGGTGTCAATGTGGTTTATGATCAGCGAACTGGGCGATCTCGA
GGATTTGCTTTTGTGTATTTTGAGAGAATAGATGACTCAAAGGAGGCTATGGAAAGGGCAAATGGAATGGAGCTGGATGG
TAGAAGAATTCGGGTGGATTATTCTATAACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGCAGACCAACTC
ATAGTGGTGGGGGTGGTGGAGGAGGCGGCGGCGGTGGAGGTGGAGGTGGTGGCAGACGTCGAGATTCTTACTATGATAGA
GGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAGAAGACGATCACCTTCTCCTTATTATAGTCG
ATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAAGACGCTATTGA

Library Parental gene expression (RPM)
bodymap2_liver 14 .89 RPM
bodymap2_lung 46 .52 RPM
bodymap2_breast 59 .75 RPM
bodymap2_adipose 38 .96 RPM
bodymap2_adrenal 80 .61 RPM
bodymap2_skeletal_muscle 16 .41 RPM
bodymap2_thyroid 57 .53 RPM
bodymap2_prostate 83 .19 RPM
bodymap2_colon 49 .93 RPM
bodymap2_testis 71 .38 RPM
bodymap2_brain 45 .71 RPM
bodymap2_heart 24 .79 RPM
bodymap2_white_blood_cells 54 .18 RPM
bodymap2_lymph_node 93 .23 RPM
bodymap2_ovary 84 .05 RPM
bodymap2_kidney 71 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001130 ortholog_one2one 1 retrogene
retro_chof_974,
Callithrix jacchus ENSCJAG00000001509 ortholog_one2one 1 retrogene
retro_cjac_1759,
Echinops telfairi ENSETEG00000007250 ortholog_one2one 2 retrogenes
retro_etel_323, retro_etel_692,
Homo sapiens ENSG00000102317 within_species_paralog 1 retrogene
retro_hsap_265,
Homo sapiens ENSG00000147274 within_species_paralog 7 retrogenes
retro_hsap_23, retro_hsap_3074, retro_hsap_3587, retro_hsap_4144, retro_hsap_4846, retro_hsap_800, retro_hsap_91,
Gorilla gorilla ENSGGOG00000009053 ortholog_one2one 1 retrogene
retro_ggor_391,
Mustela putorius furo ENSMPUG00000013480 ortholog_one2one 1 retrogene
retro_mputfur_1442,
Nomascus leucogenys ENSNLEG00000014794 ortholog_one2one 1 retrogene
retro_nleu_1481,
Otolemur garnettii ENSOGAG00000009733 ortholog_one2one 3 retrogenes
retro_ogar_1966, retro_ogar_2558, retro_ogar_3027,
Pongo abelii ENSPPYG00000017728 ortholog_one2one 1 retrogene
retro_pabe_324,
Pan troglodytes ENSPTRG00000018988 ortholog_one2one 1 retrogene
retro_ptro_299,
Sorex araneus ENSSARG00000012900 ortholog_one2one 1 retrogene
retro_sara_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_386 80.79 71.63
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Download FASTA sequences of all ENSG00000164548 retrocopies