Parental gene:

DDX3X, ENSPPYG00000020257

Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked [Source:HGNC Symbol;Acc:2745]
Organism:Orangutan (Pongo abelii)
Coordinates:X:41919983..41936644(+)


>ENSPPYG00000020257
ATGAGTCATGTGGCAGTGGAAAATGCGCTCGGGCTGGACCAGCAGTTTGCTGGCCTAGACCTGAACTCTTCAGATAATCA
GAGTGGAGGAAGTACAGCCAGCAAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAGAAGCTACTAAAGGTTTCTACG
ATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGTATAGCAGTTTTGGATCTCGTAGTGATTCAAGAGGG
AAGTCTAGCTTCTTCAGTGATCGTGGAAGTGGATCAAGGGGAAGGTTTGATGATCGTGGACGGAGTGATTACGACGGCAT
TGGCAGCCGTGGTGACAGAAGTGGCTTTGGCAAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGATGAAG
ATGATTGGTCAAAACCACTCCCACCAAGTGAACGCTTGGAACAGGAACTCTTTTCTGGAGGCAACACTGGGATTAATTTT
GAGAAATATGATGACATTCCAGTTGAGGCAACAGGCAACAACTGTCCTCCACATATTGAAAGTTTCAGTGATGTTGAGAT
GGGAGAAATTATCATGGGAAACATTGAGCTTACTCGTTATACTCGCCCAACTCCAGTGCAAAAGCATGCTATTCCTATTA
TCAAAGAGAAAAGAGACTTGATGGCTTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTGTTGCCCATCTTGAGT
CAGATTTATTCAGATGGTCCAGGCGAGGCTTTGAGGGCCATGAAGGAAAATGGAAGGTATGGGCGCCGCAAACAATACCC
AATCTCCTTGGTATTAGCACCAACGAGAGAGTTGGCAGTACAGATCTACGAGGAAGCCAGAAAATTTTCATACCGATCTA
GAGTTCGTCCTTGCGTGGTTTATGGTGGTGCCGATATTGGTCAGCAGATTCGAGACTTGGAACGTGGATGCCATTTGTTA
GTAGCCACTCCAGGACGTCTAGTGGATATGATGGAAAGAGGAAAGATTGGATTAGACTTTTGCAAATATTTGGTGTTAGA
TGAAGCTGATCGGATGTTGGATATGGGGTTTGAACCTCAGATTCGTAGAATAGTTGAACAAGATACTATGCCTCCAAAGG
GTGTCCGCCACACTATGATGTTTAGTGCTACTTTCCCTAAGGAAATACAGATGCTGGCTCGTGATTTCTTAGATGAATAT
ATCTTCTTGGCTGTAGGAAGAGTTGGCTCTACCTCTGAAAACATCACACAGAAAGTAGTTTGGGTGGAAGAATCAGACAA
ACGGTCATTTCTGCTTGACCTCCTAAATGCAACAGGCAAGGATTCACTGACCTTAGTGTTTGTGGAGACCAAAAAGGGTG
CAGATTCTCTGGAGGATTTCTTGTACCATGAAGGATACGCATGTACCAGTATCCATGGAGACCGTTCTCAGAGGGATAGA
GAAGAGGCCCTTCACCAGTTCCGCTCAGGAAAAAGCCCAATTCTAGTGGCTACAGCAGTAGCAGCAAGAGGACTGGACAT
TTCAAATGTGAAACATGTTATCAATTTTGACTTGCCAAGTGATATTGAAGAATATGTACATCGTATTGGTCGTACAGGAC
GTGTAGGAAACCTTGGCCTGGCAACCTCATTCTTTAACGAGAGGAACATAAATATTACTAAGGATTTGTTGGATCTTCTT
GTTGAAGCTAAACAAGAAGTGCCGTCTTGGTTAGAAAACATGGCTTATGAACACCACTACAAGGGTAGCAGTCGTGGACG
TTCTAAGAGTAGCAGATTTAGTGGAGGGTTTGGTGCCAGAGACTACCGACAAAGTAGCGGTGCCAGCAGTTCCAGCTTCA
GTAGCAGCCGCGCAAGCAGCAGCCGCAGTGGTGGAGGTGGCCACGGTAGCAGCAGAGGATTCGGTGGAGGTGGCTATGGA
GGCTTTTACAACAGTGATGGATATGGAGGAAATTATAACTCCCAGGGGGTTGACTGGTGGGGTAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 139 .11 RPM
SRP007412_cerebellum 173 .28 RPM
SRP007412_heart 114 .60 RPM
SRP007412_kidney 164 .74 RPM
SRP007412_liver 135 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000035907 ortholog_one2one 1 retrogene
retro_btau_1846,
Callithrix jacchus ENSCJAG00000009050 ortholog_one2many 2 retrogenes
retro_cjac_1428, retro_cjac_4062,
Cavia porcellus ENSCPOG00000013557 ortholog_one2one 2 retrogenes
retro_cpor_326, retro_cpor_53,
Equus caballus ENSECAG00000009901 ortholog_one2one 1 retrogene
retro_ecab_413,
Homo sapiens ENSG00000215301 ortholog_one2one 1 retrogene
retro_hsap_4709,
Macaca mulatta ENSMMUG00000017569 ortholog_one2one 2 retrogenes
retro_mmul_1898, retro_mmul_2504,
Mus musculus ENSMUSG00000000787 ortholog_one2many 1 retrogene
retro_mmus_205,
Ornithorhynchus anatinus ENSOANG00000011274 ortholog_one2one 1 retrogene
retro_oana_64,
Rattus norvegicus ENSRNOG00000023383 ortholog_one2many 1 retrogene
retro_rnor_1415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3657 80.35 51.66
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Download FASTA sequences of all ENSPPYG00000020257 retrocopies