Parental gene:

DDX3X, ENSBTAG00000035907

Aliases:None
Description:ATP-dependent RNA helicase DDX3X [Source:RefSeq peptide;Acc:NP_001179891]
Organism:Cow (Bos taurus)
Coordinates:X:107678776..107691829(-)


>ENSBTAG00000035907
ATGAGTCATGTGGCGGTGGAAAATGCGCTCGGGCTGGACCAGCAGTTTGCTGGCCTAGACCTGAACTCTTCAGATAATCA
GAGTGGAGGAAGTACAGCCAGCAAAGGGCGCTATATTCCTCCTCACTTAAGGAACAGAGAAGCTACTAAAGGATTCTATG
ATAAAGACAGTTCAGGGTGGAGTTCTAGTAAAGATAAGGATGCATACAGCAGTTTTGGTTCCCGTAGTGATTCAAGAGGA
AAGTCTAGTTTCTTCAGTGATCGTGGAAGTGGATCAAGGGGAAGGTTTGATGATCGTGGACGAGGTGACTATGATGGCAT
TGGCGGCCGTGGTGACAGAGGTGGTTTTGGCAAATACGAACGTGGAAATAGCCGCTGGTGTGACAAATCAGATGAAGATG
ATTGGTCAAAACCACTCCCACCAAGTGAACGCTTGGAACAAGAACTCTTTTCTGGAGGCAACACTGGGATTAACTTTGAA
AAATATGATGACATTCCAGTTGAGGCAACAGGCAACAACTGTCCTCCACACATTGAAAGTTTCAGTGATGTTGAGATGGG
AGAAATTATTATGGGAAACATTGAGCTTACTCGTTACACTCGCCCAACTCCAGTGCAAAAGCATGCTATTCCTATTATCA
AAGAGAAGAGAGACTTGATGGCCTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTCTTGCCCATCTTGAGTCAG
ATTTATTCTGATGGTCCCGGTGAGGCTCTGAGGGCCATGAAGGAAAATGGAAGATATGGGCGCCGCAAACAATACCCAAT
CTCTTTGGTGTTAGCACCAACTAGAGAATTGGCCGTACAGATCTATGAGGAAGCCAGGAAATTTTCATACCGATCTAGAG
TTCGTCCTTGTGTGGTTTATGGTGGTGCTGATATTGGTCAGCAAATTCGAGACTTAGAACGTGGATGCCATTTATTAGTT
GCGACTCCAGGACGTCTAGTGGATATGATGGAAAGAGGAAAAATTGGATTAGACTTCTGCAAGTACTTGGTGTTAGATGA
AGCCGATCGGATGTTGGATATGGGGTTTGAACCTCAGATACGTAGAATCGTTGAACAAGATACTATGCCACCAAAGGGAG
TTCGCCACACTATGATGTTTAGTGCTACTTTCCCTAAGGAAATACAGATGCTTGCTCGTGACTTCTTGGATGAATATATC
TTTTTGGCCGTAGGAAGAGTTGGCTCTACCTCTGAGAACATAACACAGAAAGTAGTTTGGGTTGAAGAGTCAGACAAACG
GTCATTTCTGCTTGATCTTCTAAATGCAACAGGCAAAGATTCACTGACCTTAGTGTTTGTGGAGACCAAAAAGGGTGCAG
ATTCTCTGGAGGATTTCTTATACCATGAAGGATATGCTTGTACCAGTATCCATGGAGACCGATCTCAGAGAGATAGAGAA
GAGGCCCTTCACCAGTTCCGCTCAGGAAAAAGCCCAATTCTCGTGGCTACAGCAGTAGCAGCAAGAGGACTGGACATATC
AAATGTGAAACATGTTATCAATTTTGACTTGCCAAGTGATATTGAAGAATATGTACATCGCATTGGCCGTACAGGACGTG
TGGGAAACCTTGGCCTTGCCACCTCATTCTTTAATGAGAGGAACATAAATATTACCAAGGATTTGTTGGATCTTCTTGTT
GAAGCTAAACAGGAAGTGCCATCTTGGTTAGAAAACATGGCTTATGAACACCACTACAAGGGTAGCAGTCGTGGACGATC
CAAAAGTAGTAGATTCAGTGGAGGATTTGGTGCCAGAGACTATCGACAGAGTAGTGGTGGCAGCAGTTCCAGCTTCAGCA
GCAGCCGCGCCAGCAGCAGCCGCAGTGGTGGAGGTGGCCATGGAAGCAGCAGAGGGTTTGGTGGAGGTGGCTATGGAAGC
TTTTACAACAGTGATGGATATGGAGGAAATTATAACTCCCAGGGGGTTGACTGGTGGGGTAACTGA

Library Parental gene expression (RPM)
SRP017611_brain 142 .98 RPM
SRP017611_kidney 238 .75 RPM
SRP017611_liver 114 .77 RPM
ERP005899_muscle 107 .37 RPM
ERP005899_liver 66 .04 RPM
SRP030211_testis 41 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009050 ortholog_one2many 2 retrogenes
retro_cjac_1428, retro_cjac_4062,
Cavia porcellus ENSCPOG00000013557 ortholog_one2one 2 retrogenes
retro_cpor_326, retro_cpor_53,
Equus caballus ENSECAG00000009901 ortholog_one2one 1 retrogene
retro_ecab_413,
Homo sapiens ENSG00000215301 ortholog_one2one 1 retrogene
retro_hsap_4709,
Macaca mulatta ENSMMUG00000017569 ortholog_one2one 2 retrogenes
retro_mmul_1898, retro_mmul_2504,
Mus musculus ENSMUSG00000000787 ortholog_one2many 1 retrogene
retro_mmus_205,
Ornithorhynchus anatinus ENSOANG00000011274 ortholog_one2many 1 retrogene
retro_oana_64,
Pongo abelii ENSPPYG00000020257 ortholog_one2one 1 retrogene
retro_pabe_3657,
Pan troglodytes ENSPTRG00000022488 possible_ortholog 1 retrogene
retro_ptro_3130,
Rattus norvegicus ENSRNOG00000023383 ortholog_one2many 1 retrogene
retro_rnor_1415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1846 85.87 56.58
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Download FASTA sequences of all ENSBTAG00000035907 retrocopies