Parental gene: | DDX3X, ENSCJAG00000009050 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | X:40214515..40230609(+) |
>ENSCJAG00000009050
ATGAGTCATGTGGCGGTGGAAAATGCGCTCGGGCTGGACCAGCAGTTTGCTGGCCTAGACCTGAACTCTTCAGATAATCA
GAGTGGAGGAAGTACAGCCAGCAAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAGAAGCTACTAAAGGTTTCTACG
ATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCATATAGCAGTTTTGGATCTCGCAGTGATTCAAGAGGG
AAGTCTAGCTTCTTCAGTGATCGTGGAAGTGGATCAAGGGGAAGATTTGATGATCGTGGACGGAGTGATTATGATGGCAT
TGGCAGCCGTGGTGACAGAAGTGGCTTTGGCAAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGATGAAG
ATGATTGGTCAAAACCACTCCCACCAAGTGAACGCTTGGAACAGGAACTCTTTTCTGGAGGCAACACTGGGATTAATTTT
GAGAAATACGATGACATTCCAGTTGAGGCAACAGGCAACAACTGTCCTCCCCATATTGAAAGTTTCAGTGATGTTGAGAT
GGGAGAAATTATCATGGGAAACATTGAGCTTACTCGTTACACTCGCCCAACTCCAGTGCAAAAGCATGCTATTCCTATTA
TCAAAGAGAAAAGAGACTTGATGGCTTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTCTTGCCCATCTTGAGT
CAGATTTATTCAGATGGTCCAGGCGAGGCTTTGAGGGCCATGAAGGAAAATGGAAGGTATGGGCGCCGCAAACAATACCC
AATCTCCTTGGTATTAGCACCAACGAGAGAGTTGGCAGTACAGATCTACGAGGAAGCCAGAAAATTTTCATACCGATCTA
GAGTTCGTCCTTGCGTGGTTTATGGTGGTGCTGATATTGGACAGCAGATTCGAGACTTGGAACGTGGATGCCACTTGTTA
GTAGCCACTCCAGGACGTCTGGTGGATATGATGGAAAGAGGAAAGATTGGATTAGACTTTTGCAAATACTTGGTGTTAGA
TGAAGCTGATCGGATGTTGGATATGGGGTTTGAGCCTCAGATACGTAGAATAGTTGAACAAGATACTATGCCTCCAAAGG
GTGTCCGCCACACTATGATGTTTAGTGCTACTTTTCCTAAGGAAATACAGATGCTGGCTCGTGATTTCTTAGATGAATAT
ATCTTCTTGGCTGTAGGAAGAGTTGGCTCTACCTCTGAAAACATCACGCAGAAAGTAGTTTGGGTTGAAGAATCAGACAA
AAGGTCATTTCTGCTTGACCTCCTAAATGCAACAGGCAAGGATTCCCTGACCTTAGTGTTTGTGGAGACCAAAAAGGGTG
CAGATTCTCTGGAGGATTTCTTATACCATGAAGGATATGCATGTACAAGTATCCATGGAGACCGCTCTCAGAGGGATAGG
GAAGAGGCTCTTCACCAGTTCCGCTCAGGAAAAAGCCCAATTCTAGTGGCTACAGCAGTAGCAGCAAGAGGACTGGACAT
TTCAAATGTGAAACATGTTATCAATTTTGACTTGCCAAGTGATATTGAAGAATATGTACATCGCATTGGTCGTACAGGAC
GTGTAGGAAACCTTGGCCTGGCAACCTCATTCTTTAACGAGAGGAATATAAACATTACTAAGGATTTGTTGGATCTTCTT
GTGGAAGCTAAACAAGAAGTGCCATCTTGGTTAGAAAACATGGCTTATGAACACCACTACAAGGGTAGCAGTCGTGGACG
TTCTAAGAGTAGCAGATTTAGCGGAGGGTTTGGTGCCAGAGACTACCGACAAAGTAGCGGTGCCAGCAGTTCCAGCTTCA
GCAGCAGCCGTGCAAGCAGCAGCCGCAGTGGCGGAGGTGGCCACGGCAGCAGCAGAGGATTCGGTGGAGGTGGCTATGGA
GGCTTCTACAACAGTGATGGATATGGAGGAAATTATAACTCCCAGGGGGTTGACTGGTGGGGTAACTGA
ATGAGTCATGTGGCGGTGGAAAATGCGCTCGGGCTGGACCAGCAGTTTGCTGGCCTAGACCTGAACTCTTCAGATAATCA
GAGTGGAGGAAGTACAGCCAGCAAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAGAAGCTACTAAAGGTTTCTACG
ATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCATATAGCAGTTTTGGATCTCGCAGTGATTCAAGAGGG
AAGTCTAGCTTCTTCAGTGATCGTGGAAGTGGATCAAGGGGAAGATTTGATGATCGTGGACGGAGTGATTATGATGGCAT
TGGCAGCCGTGGTGACAGAAGTGGCTTTGGCAAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGATGAAG
ATGATTGGTCAAAACCACTCCCACCAAGTGAACGCTTGGAACAGGAACTCTTTTCTGGAGGCAACACTGGGATTAATTTT
GAGAAATACGATGACATTCCAGTTGAGGCAACAGGCAACAACTGTCCTCCCCATATTGAAAGTTTCAGTGATGTTGAGAT
GGGAGAAATTATCATGGGAAACATTGAGCTTACTCGTTACACTCGCCCAACTCCAGTGCAAAAGCATGCTATTCCTATTA
TCAAAGAGAAAAGAGACTTGATGGCTTGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTCTTGCCCATCTTGAGT
CAGATTTATTCAGATGGTCCAGGCGAGGCTTTGAGGGCCATGAAGGAAAATGGAAGGTATGGGCGCCGCAAACAATACCC
AATCTCCTTGGTATTAGCACCAACGAGAGAGTTGGCAGTACAGATCTACGAGGAAGCCAGAAAATTTTCATACCGATCTA
GAGTTCGTCCTTGCGTGGTTTATGGTGGTGCTGATATTGGACAGCAGATTCGAGACTTGGAACGTGGATGCCACTTGTTA
GTAGCCACTCCAGGACGTCTGGTGGATATGATGGAAAGAGGAAAGATTGGATTAGACTTTTGCAAATACTTGGTGTTAGA
TGAAGCTGATCGGATGTTGGATATGGGGTTTGAGCCTCAGATACGTAGAATAGTTGAACAAGATACTATGCCTCCAAAGG
GTGTCCGCCACACTATGATGTTTAGTGCTACTTTTCCTAAGGAAATACAGATGCTGGCTCGTGATTTCTTAGATGAATAT
ATCTTCTTGGCTGTAGGAAGAGTTGGCTCTACCTCTGAAAACATCACGCAGAAAGTAGTTTGGGTTGAAGAATCAGACAA
AAGGTCATTTCTGCTTGACCTCCTAAATGCAACAGGCAAGGATTCCCTGACCTTAGTGTTTGTGGAGACCAAAAAGGGTG
CAGATTCTCTGGAGGATTTCTTATACCATGAAGGATATGCATGTACAAGTATCCATGGAGACCGCTCTCAGAGGGATAGG
GAAGAGGCTCTTCACCAGTTCCGCTCAGGAAAAAGCCCAATTCTAGTGGCTACAGCAGTAGCAGCAAGAGGACTGGACAT
TTCAAATGTGAAACATGTTATCAATTTTGACTTGCCAAGTGATATTGAAGAATATGTACATCGCATTGGTCGTACAGGAC
GTGTAGGAAACCTTGGCCTGGCAACCTCATTCTTTAACGAGAGGAATATAAACATTACTAAGGATTTGTTGGATCTTCTT
GTGGAAGCTAAACAAGAAGTGCCATCTTGGTTAGAAAACATGGCTTATGAACACCACTACAAGGGTAGCAGTCGTGGACG
TTCTAAGAGTAGCAGATTTAGCGGAGGGTTTGGTGCCAGAGACTACCGACAAAGTAGCGGTGCCAGCAGTTCCAGCTTCA
GCAGCAGCCGTGCAAGCAGCAGCCGCAGTGGCGGAGGTGGCCACGGCAGCAGCAGAGGATTCGGTGGAGGTGGCTATGGA
GGCTTCTACAACAGTGATGGATATGGAGGAAATTATAACTCCCAGGGGGTTGACTGGTGGGGTAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 217 .02 RPM |
| SRP051959_skeletal_muscle | 173 .61 RPM |
| SRP051959_lymph_node | 230 .95 RPM |
| SRP051959_lung | 257 .40 RPM |
| SRP051959_liver | 204 .61 RPM |
| SRP051959_kidney | 286 .73 RPM |
| SRP051959_heart | 215 .46 RPM |
| SRP051959_colon | 163 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000035907 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000013557 | ortholog_one2many | 2 retrogenes | |
| Equus caballus | ENSECAG00000009901 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000215301 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017569 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000000787 | ortholog_many2many | 1 retrogene | |
| Ornithorhynchus anatinus | ENSOANG00000011274 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000020257 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022488 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000023383 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1428 | 91.47 | 66.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4062 | 82.28 | 63.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009050 retrocopies