Parental gene: | ACTA2, ENSOCUG00000008193 |
| Aliases: | None |
| Description: | actin, alpha 2, smooth muscle, aorta (ACTA2), mRNA [Source:RefSeq mRNA;Acc:NM_001101682] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 18:36853089..36871014(-) |
>ENSOCUG00000008193
ATGGCCTCCCATTTCATGAGCCGAGCCCTGGAATGTGGTGGAAGAGACCCAGGCCTCTGGCCACCCAGATTAGAGAGTTT
TGTGCTGAGGTCCCTATATGGTTGTGTTAGACTGAACTACGGGCTCCAGTCTGTCTTGGTTCCTTGTTTGGGAAGCAAGT
GGGAGGGGAGCAGACCTAGGAGCTATATAACCCTTGAGTGTTCAGCTGCCCTGAGCACCACCCACCCAGAGTGGAGAAGC
CCAGCCCAGCACTGTCAGGAATCCCGTGAAGCAGCTGCAGCTATGTGTGAGGAAGAGGACAGCACCGCCCTTGTGTGTGA
CAATGGCTCCGGGCTCTGTAAGGCTGGCTTTGCCGGAGACGATGCTCCAAGAGCTGTTTTCCCATCCATTGTGGGACGTC
CCAGGCACCAGGGGGTGATGGTGGGAATGGGACAAAAAGACAGCTACGTGGGTGATGAAGCGCAGAGCAAAAGAGGAATC
CTGACCTTGAAGTACCCGATCGAACATGGCATCATCACCAACTGGGACGACATGGAAAAGATCTGGCACCACTCCTTCTA
CAATGAGCTCCGCGTTGCCCCTGAAGAACATCCAACCCTGTTGACTGAGGCACCGCTGAACCCCAAAGCCAACCGGGAGA
AAATGACCCAGATTATGTTTGAGACTTTCAATGTCCCAGCCATGTACGTGGCTATTCAGGCGGTGCTGTCCCTCTATGCC
TCTGGACGTACAACTGGCATTGTGCTGGACTCTGGAGATGGTGTCACCCACAACGTGCCCATCTATGAGGGCTATGCCCT
GCCCCATGCCATCATGCGTCTGGACCTGGCAGGCCGAGATCTCACTGACTACCTCATGAAGATCCTGACTGAGCGTGGCT
ATTCCTTCGTGACTACTGCTGAACGTGAGATTGTCCGGGACATCAAAGAGAAATTGTGCTATGTCGCTCTGGACTTTGAA
AACGAGATGGCCACTGCTGCATCCTCCTCCTCCCTCGAGAAGAGCTATGAGCTGCCTGACGGGCAGGTGATCACCATCGG
GAACGAACGCTTCCGCTGCCCAGAGACCCTGTTCCAGCCCTCCTTCATCGGGATGGAATCTGCTGGCATCCATGAAACCA
CCTACAACAGCATCATGAAGTGTGACATCGACATCAGGAAGGACCTCTATGCTAACAATGTGCTCTCAGGGGGCACCACC
ATGTACCCTGGCATTGCTGACCGCATGCAGAAGGAAATCACAGCCCTAGCTCCCAGCACCATGAAGATCAAGATAATTGC
CCCTCCAGAGCGCAAATACTCCGTCTGGATCGGCGGCTCCATCCTGGCCTCTCTGTCCACCTTTCAGCAGATGTGGATCA
GCAAACAGGAGTACGATGAAGCCGGGCCCTCCATTGTCCACCGCAAATGCTTCTAA
ATGGCCTCCCATTTCATGAGCCGAGCCCTGGAATGTGGTGGAAGAGACCCAGGCCTCTGGCCACCCAGATTAGAGAGTTT
TGTGCTGAGGTCCCTATATGGTTGTGTTAGACTGAACTACGGGCTCCAGTCTGTCTTGGTTCCTTGTTTGGGAAGCAAGT
GGGAGGGGAGCAGACCTAGGAGCTATATAACCCTTGAGTGTTCAGCTGCCCTGAGCACCACCCACCCAGAGTGGAGAAGC
CCAGCCCAGCACTGTCAGGAATCCCGTGAAGCAGCTGCAGCTATGTGTGAGGAAGAGGACAGCACCGCCCTTGTGTGTGA
CAATGGCTCCGGGCTCTGTAAGGCTGGCTTTGCCGGAGACGATGCTCCAAGAGCTGTTTTCCCATCCATTGTGGGACGTC
CCAGGCACCAGGGGGTGATGGTGGGAATGGGACAAAAAGACAGCTACGTGGGTGATGAAGCGCAGAGCAAAAGAGGAATC
CTGACCTTGAAGTACCCGATCGAACATGGCATCATCACCAACTGGGACGACATGGAAAAGATCTGGCACCACTCCTTCTA
CAATGAGCTCCGCGTTGCCCCTGAAGAACATCCAACCCTGTTGACTGAGGCACCGCTGAACCCCAAAGCCAACCGGGAGA
AAATGACCCAGATTATGTTTGAGACTTTCAATGTCCCAGCCATGTACGTGGCTATTCAGGCGGTGCTGTCCCTCTATGCC
TCTGGACGTACAACTGGCATTGTGCTGGACTCTGGAGATGGTGTCACCCACAACGTGCCCATCTATGAGGGCTATGCCCT
GCCCCATGCCATCATGCGTCTGGACCTGGCAGGCCGAGATCTCACTGACTACCTCATGAAGATCCTGACTGAGCGTGGCT
ATTCCTTCGTGACTACTGCTGAACGTGAGATTGTCCGGGACATCAAAGAGAAATTGTGCTATGTCGCTCTGGACTTTGAA
AACGAGATGGCCACTGCTGCATCCTCCTCCTCCCTCGAGAAGAGCTATGAGCTGCCTGACGGGCAGGTGATCACCATCGG
GAACGAACGCTTCCGCTGCCCAGAGACCCTGTTCCAGCCCTCCTTCATCGGGATGGAATCTGCTGGCATCCATGAAACCA
CCTACAACAGCATCATGAAGTGTGACATCGACATCAGGAAGGACCTCTATGCTAACAATGTGCTCTCAGGGGGCACCACC
ATGTACCCTGGCATTGCTGACCGCATGCAGAAGGAAATCACAGCCCTAGCTCCCAGCACCATGAAGATCAAGATAATTGC
CCCTCCAGAGCGCAAATACTCCGTCTGGATCGGCGGCTCCATCCTGGCCTCTCTGTCCACCTTTCAGCAGATGTGGATCA
GCAAACAGGAGTACGATGAAGCCGGGCCCTCCATTGTCCACCGCAAATGCTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 22 .20 RPM |
| SRP017611_kidney | 42 .77 RPM |
| SRP017611_brain | 17 .99 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000759 | ortholog_one2one | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006719 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008526 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010843 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015509 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012233 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004074 | other_paralog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000005867 | within_species_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002459 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000005778 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017616 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000008155 | ortholog_one2one | 5 retrogenes | |
| Vicugna pacos | ENSVPAG00000010621 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_919 | 90.96 | 79.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1306 | 87.34 | 80.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1421 | 87.47 | 80.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000008193 retrocopies