Parental gene:

PSMB1, ENSOCUG00000007973

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 1 [Source:HGNC Symbol;Acc:9537]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018966:45494..60668(+)


>ENSOCUG00000007973
ATGTTGAGCTCTCCAGCCATGTACTCGGGTCCCGGCCGAGACCTGGGGATGGACGTGCACAGTGTCGCGGGCCCGGTGCA
GCGGCGCTTTTCGCCTTACGCCTTCAACGGAGGTACTGTATTGGCAATTGCTGGAGAAGATTTTTCCATTGTTGCTTCTG
ACACTCGATTGAGTGAAGGATTTTCAATTCACACGCGGGACAGCCCTAAATGTTACAAATTAACAGATAGAACAGTCATC
GGATGCAGTGGTTTCCATGGAGACTGTCTTACCTTGACAAAGATTATTGAAGCAAGACTAAAGATGTATAAGCATTCCAA
TAATAAGGCCATGACTACAGGGGCAATTGCTGCAATGCTGTCTACAATCCTGTACTCCAGGCGCTTCTTTCCATACTATG
TTTACAACATCATCGGTGGACTTGATGAAGAAGGGAAGGGAGCCGTGTACAGCTTTGACCCAGTGGGATCCTACCAGCGA
GACTCCTTCAAGGCCGGAGGCTCTGCCAGTGCCATGCTGCAACCTCTGCTGGACAACCAGGTTGGCTTTAAGAACATGCA
GAACGTTGAGCACATCCCACTGACCTTGGATAGAGCCATGCGACTGGTGAAAGATGTCTTCATTTCTGCAGCCGAGAGGG
ACGTGTATACAGGGGACGCACTCCGGATCTGCATTGTAACCAAAGAAGGCATCAGGGAGGAGACTGTCCCCCTGCGGAAG
GACTGA

Library Parental gene expression (RPM)
SRP017611_liver 37 .54 RPM
SRP017611_kidney 62 .03 RPM
SRP017611_brain 63 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017047 ortholog_one2one 1 retrogene
retro_amel_1066,
Canis familiaris ENSCAFG00000004116 ortholog_one2one 1 retrogene
retro_cfam_2108,
Callithrix jacchus ENSCJAG00000020644 ortholog_one2one 1 retrogene
retro_cjac_632,
Dasypus novemcinctus ENSDNOG00000019502 ortholog_one2one 1 retrogene
retro_dnov_2087,
Felis catus ENSFCAG00000031269 ortholog_one2one 1 retrogene
retro_fcat_911,
Gorilla gorilla ENSGGOG00000022128 ortholog_one2one 1 retrogene
retro_ggor_1661,
Microcebus murinus ENSMICG00000007469 ortholog_one2one 1 retrogene
retro_mmur_173,
Macaca mulatta ENSMMUG00000019919 ortholog_one2one 1 retrogene
retro_mmul_1135,
Mustela putorius furo ENSMPUG00000007150 ortholog_one2one 1 retrogene
retro_mputfur_1196,
Mus musculus ENSMUSG00000014769 ortholog_one2one 2 retrogenes
retro_mmus_1784, retro_mmus_3664,
Procavia capensis ENSPCAG00000000344 ortholog_one2one 1 retrogene
retro_pcap_329,
Pongo abelii ENSPPYG00000017191 ortholog_one2many 1 retrogene
retro_pabe_130,
Vicugna pacos ENSVPAG00000006517 ortholog_one2one 1 retrogene
retro_vpac_521,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_620 92.31 64.32
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2. retro_ocun_1029 62.36 71.78
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Download FASTA sequences of all ENSOCUG00000007973 retrocopies