Parental gene:

Psmb1, ENSMUSG00000014769

Aliases:Psmb1, AA409053, C81484, Lmpc5
Description:proteasome (prosome, macropain) subunit, beta type 1 [Source:MGI Symbol;Acc:MGI:104884]
Organism:Mouse (Mus musculus)
Coordinates:17:15475720..15498276(-)


>ENSMUSG00000014769
ATGCTTTCCACTGCTGCTTACCGAGACGTGGAACGAGAGCTGGGAATGGGGCCTCACGGCTCCGCCGGCCCTGTGCAGCT
GCGGTTTTCGCCTTATGCCTTCAACGGAGGTACTGTATTGGCAATTGCTGGAGAAGATTTTTCCATCGTCGCTTCAGACA
CTCGATTGAGTGAAGGATTTTCAATTCATACCCGAGATAGCCCCAAATGCTACAAACTGACAGACAAGACAGTAATTGGC
TGCAGTGGTTTCCATGGAGATTGTCTCACTTTGACAAAGATTATTGAAGCAAGATTAAAGATGTACAAGCATTCCAATAA
CAAGGCCATGACAACGGGGGCGATTGCTGCAATGCTGTCTACCATCCTGTACTCACGGCGCTTCTTCCCTTACTATGTTT
ACAACATCATTGGAGGACTTGATGAAGAAGGAAAGGGAGCTGTGTACAGCTTTGACCCAGTGGGCTCTTACCAGAGAGAC
TCTTTCAAGGCGGGAGGCTCAGCAAGTGCCATGCTGCAGCCTCTGCTCGACAACCAGGTTGGCTTCAAAAATATGCAGAA
TGTAGAGCACGTCCCCCTGACGCTGGACAGAGCCATGAGGCTGGTGAAAGATGTCTTCATTTCTGCAGCCGAGAGGGATG
TGTATACTGGAGATGCTCTCAGGATCTGCATCGTGACCAAAGAGGGCATCAGGGAGGAAACTGTTCCCCTGCGGAAAGAC
TGA

Library Parental gene expression (RPM)
SRP007412_brain 84 .95 RPM
SRP007412_cerebellum 64 .87 RPM
SRP007412_heart 54 .54 RPM
SRP007412_kidney 64 .12 RPM
SRP007412_liver 84 .06 RPM
SRP007412_testis 32 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017047 ortholog_one2one 1 retrogene
retro_amel_1066,
Canis familiaris ENSCAFG00000004116 ortholog_one2one 1 retrogene
retro_cfam_2108,
Callithrix jacchus ENSCJAG00000020644 ortholog_one2one 1 retrogene
retro_cjac_632,
Dasypus novemcinctus ENSDNOG00000019502 ortholog_one2one 1 retrogene
retro_dnov_2087,
Felis catus ENSFCAG00000031269 ortholog_one2one 1 retrogene
retro_fcat_911,
Gorilla gorilla ENSGGOG00000022128 ortholog_one2one 1 retrogene
retro_ggor_1661,
Microcebus murinus ENSMICG00000007469 ortholog_one2one 1 retrogene
retro_mmur_173,
Macaca mulatta ENSMMUG00000019919 ortholog_one2one 1 retrogene
retro_mmul_1135,
Mustela putorius furo ENSMPUG00000007150 ortholog_one2one 1 retrogene
retro_mputfur_1196,
Oryctolagus cuniculus ENSOCUG00000007973 ortholog_one2one 2 retrogenes
retro_ocun_1029, retro_ocun_620,
Procavia capensis ENSPCAG00000000344 ortholog_one2one 1 retrogene
retro_pcap_329,
Pongo abelii ENSPPYG00000017191 ortholog_one2many 1 retrogene
retro_pabe_130,
Vicugna pacos ENSVPAG00000006517 ortholog_one2one 1 retrogene
retro_vpac_521,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1784 81.70 63.33
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2. retro_mmus_3664 88.89 55.83
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Download FASTA sequences of all ENSMUSG00000014769 retrocopies