Parental gene:

PSMB1, ENSCAFG00000004116

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 1 [Source:HGNC Symbol;Acc:9537]
Organism:Dog (Canis familiaris)
Coordinates:12:72439726..72456252(-)


>ENSCAFG00000004116
ATGCTGTCGACCGCCGCGCGGGGCTGGGGACCCGGCCGAGACCTGGCGATGGAGCCCGACGGCGCCGCGGGCCCCCAGCA
GCTGCGCTTCTCGCCCTACGCCTTCAACGGAGGTACTGTATTGGCAATCGCTGGAGAAGATTTTTCAATTGTTGCTTCTG
ACACTCGATTGAGTGAAGGGTTTTCAATTCACACCCGGGATAGCCCCAAGTGTTATAAATTAACAGACAAAACAGTTATT
GGATGCAGCGGTTTTCATGGAGACTGTCTCACCCTGACAAAGATTATTGAAGCAAGACTAAAGATGTATAAGCATTCTAA
CAACAAAACCATGACTACAGGGGCGATTGCTGCGATGCTGTCTACAATCCTCTACTCAAGGCGCTTCTTTCCCTACTACG
TTTACAACATCATTGGGGGACTGGATGAAGAAGGGAAGGGAGCTGTGTACAGCTTCGACCCAGTAGGGTCCTACCAGAGA
GACTCCTTCAAGGCTGGAGGCTCAGCAAGTGCCATGCTCCAGCCGCTGCTTGACAACCAGGTAATGACACCGCATCCAGG
CTGGTCATGA

Library Parental gene expression (RPM)
SRP017611_brain 38 .58 RPM
SRP017611_kidney 102 .75 RPM
SRP017611_liver 34 .95 RPM
SRP012049_cerebellum 63 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017047 ortholog_one2one 1 retrogene
retro_amel_1066,
Callithrix jacchus ENSCJAG00000020644 ortholog_one2one 1 retrogene
retro_cjac_632,
Dasypus novemcinctus ENSDNOG00000019502 ortholog_one2one 1 retrogene
retro_dnov_2087,
Felis catus ENSFCAG00000031269 ortholog_one2one 1 retrogene
retro_fcat_911,
Gorilla gorilla ENSGGOG00000022128 ortholog_one2one 1 retrogene
retro_ggor_1661,
Microcebus murinus ENSMICG00000007469 ortholog_one2one 1 retrogene
retro_mmur_173,
Macaca mulatta ENSMMUG00000019919 ortholog_one2one 1 retrogene
retro_mmul_1135,
Mustela putorius furo ENSMPUG00000007150 ortholog_one2one 1 retrogene
retro_mputfur_1196,
Mus musculus ENSMUSG00000014769 ortholog_one2one 2 retrogenes
retro_mmus_1784, retro_mmus_3664,
Oryctolagus cuniculus ENSOCUG00000007973 ortholog_one2one 2 retrogenes
retro_ocun_1029, retro_ocun_620,
Procavia capensis ENSPCAG00000000344 ortholog_one2one 1 retrogene
retro_pcap_329,
Pongo abelii ENSPPYG00000017191 ortholog_one2many 1 retrogene
retro_pabe_130,
Vicugna pacos ENSVPAG00000006517 ortholog_one2one 1 retrogene
retro_vpac_521,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2108 67.19 66.14
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Download FASTA sequences of all ENSCAFG00000004116 retrocopies