Parental gene:

SMS, ENSMMUG00000020392

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:X:19705346..19763323(+)


>ENSMMUG00000020392
ATGCTCGGCGCCAAAGCTGATGGTGAGACCATTCTAAAAGGCCTCCAGTCCATTTTCCAGGAGCAAGGAATGGCGGAGTC
GGTGCACACCTGGCAGGACCATGGCTATTTAGCAACCTACACAAACAAGAACGGCAGCTTTGCCAATTTGAGAATTTACC
CACATGGATTGGTGTTGCTGGACCTTCAGAGTTATGATGGTGATGCGCAAGGCAAAGAAGAGATCGACAGTATTTTGAAC
AAAGTAGAAGAAAGAATGAAAGAATTGAGTCAGGACAGTACTGGGCGGGTGAAACGATTACCACCCATAGTGCGAGGAGG
AGCCATTGACAGATATTGGCCAACCGCTGATGGGCGTCTGGTTGAATATGACATAGATGAAGTGGTATATGACGAAGATT
CACCTTATCAAAATATAAAAATTCTACACTCGAAGCAGTTTGGAAATATTCTCATCCTTAGTGGGGATGTTAATTTGGCA
GAGAGTGATTTGGCGTATACCCGGGCCATCATGGGCAGTGGCAAAGAAGATTACACTGGCAAAGATGTACTCATTCTGGG
AGGTGGAGATGGAGGCATATTGTATGAAATAGTCAAACTAAAACCAAAGATGGTCACTATGGTAGAGATTGACCAAATGG
TGATCGATGGGTGTAAGAAATACATGCGAAAAACGTGTGGCGATGTCTTAGACAATCTTAAAGGAGACTGCTATCAGGTT
CTAATAGAAGACTGTATTCCGGTACTGAAGAGGTACGCCAAAGAAGGGAGAGAATTTGATTATGTGATTAATGATTTGAC
TGCTGTTCCAATCTCCACGTCTCCAGAAGAAGATTCCACATGGGAGTTTCTCAGACTGATTCTTGACCTCTCAATGAAAG
TGTTGAAACAGGATGGGAAATATTTTACACAGGGGAACTGTGTCAATCTGACAGAAGCGCTGTCGCTCTATGAAGAACAG
CTGGGGCACCTGTATTGTCCTGTGGAATTTTCAAAGGAGATCGTCTGTGTCCCTTCATATTTGGAATTGTGGGTATTTTA
CACTGTTTGGAAGAAAGCTAAACCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .75 RPM
SRP007412_brain 52 .33 RPM
SRP007412_cerebellum 54 .76 RPM
SRP007412_heart 71 .66 RPM
SRP007412_kidney 88 .61 RPM
SRP007412_liver 11 .56 RPM
SRP007412_testis 12 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018382 possible_ortholog 1 retrogene
retro_btau_1412,
Canis familiaris ENSCAFG00000013284 possible_ortholog 3 retrogenes
retro_cfam_1076, retro_cfam_1995, retro_cfam_613,
Cavia porcellus ENSCPOG00000006176 ortholog_one2one 2 retrogenes
retro_cpor_729, retro_cpor_889,
Echinops telfairi ENSETEG00000010098 ortholog_one2many 2 retrogenes
retro_etel_1066, retro_etel_1540,
Homo sapiens ENSG00000102172 ortholog_one2one 5 retrogenes
retro_hsap_243, retro_hsap_3168, retro_hsap_3193, retro_hsap_3611, retro_hsap_4826,
Gorilla gorilla ENSGGOG00000003123 possible_ortholog 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Monodelphis domestica ENSMODG00000007897 ortholog_many2many 1 retrogene
retro_mdom_412,
Mus musculus ENSMUSG00000071708 ortholog_one2one 6 retrogenes
retro_mmus_2162, retro_mmus_2170, retro_mmus_2837, retro_mmus_3502, retro_mmus_3628, retro_mmus_994,
Nomascus leucogenys ENSNLEG00000009955 ortholog_one2one 4 retrogenes
retro_nleu_1664, retro_nleu_2200, retro_nleu_2208, retro_nleu_2755,
Pongo abelii ENSPPYG00000020182 ortholog_one2one 4 retrogenes
retro_pabe_2649, retro_pabe_2810, retro_pabe_3752, retro_pabe_38,
Pteropus vampyrus ENSPVAG00000016785 possible_ortholog 1 retrogene
retro_pvam_524,
Rattus norvegicus ENSRNOG00000007688 ortholog_one2many 2 retrogenes
retro_rnor_1934, retro_rnor_938,
Tupaia belangeri ENSTBEG00000012109 ortholog_one2one 3 retrogenes
retro_tbel_1630, retro_tbel_1893, retro_tbel_3570,
Vicugna pacos ENSVPAG00000007543 possible_ortholog 1 retrogene
retro_vpac_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_2003 87.99 100.00
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2. retro_mmul_2574 82.86 59.15
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Download FASTA sequences of all ENSMMUG00000020392 retrocopies