Parental gene:

MMU.4150, ENSMMUG00000013379

Aliases:None
Description:60S ribosomal protein L8 [Source:RefSeq peptide;Acc:NP_001253030]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1099214725799:0..2343(+)


>ENSMMUG00000013379
ATGGGCCGTGTGATCCGTGGACAGAGGAAGGGCGCCGGGTCTGTGTTTCGCGCGCACGTGAAGCACCGTAAGGGCGCTGC
GCGCCTGCGCGCCGTGGATTTCGCCGAGCGGCACGGCTACATCAAGGGCATCGTGAAGGACATCATCCACGACCCGGGCC
GCGGCGCGCCGCTCGCCAAGGTGGTCTTCCGGGATCCGTACCGGTTTAAGAAGCGGACGGAGCTGTTCATTGCCGCCGAG
GGCATTCACACGGGACAGTTTGTGTATTGCGGCAAGAAGGCCCAGCTCAACATTGGCAATGTGCTCCCTGTGGGCACCAT
GCCTGAGGGTACGATCGTGTGCTGCCTGGAGGAGAAGCCCGGAGACCGTGGCAAGCTGGCCCGGGCATCAGGGAACTATG
CCACCGTTATCTCCCACAACCCTGAGACCAAGAAGACCCGTGTGAAGCTGCCCTCCGGCTCCAAGAAGGTTATCTCCTCA
GCTAACAGAGCTGTGGTTGGTGTGGTGGCTGGAGGTGGCCGAATTGACAAACCCATCTTGAAGGCTGGCCGGGCCTACCA
CAAATATAAGGCAAAGAGGAACTGCTGGCCACGAGTACGGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTCGGAGGTG
GCAACCACCAGCACATCGGCAAGCCCTCTACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCC
CGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 185 .71 RPM
SRP007412_brain 45 .94 RPM
SRP007412_cerebellum 48 .50 RPM
SRP007412_heart 220 .53 RPM
SRP007412_kidney 119 .83 RPM
SRP007412_liver 344 .14 RPM
SRP007412_testis 118 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017933 ortholog_many2many 1 retrogene
retro_acar_31,
Ailuropoda melanoleuca ENSAMEG00000005395 ortholog_one2one 1 retrogene
retro_amel_241,
Bos taurus ENSBTAG00000026327 possible_ortholog 1 retrogene
retro_btau_96,
Canis familiaris ENSCAFG00000001677 possible_ortholog 1 retrogene
retro_cfam_1132,
Callithrix jacchus ENSCJAG00000021388 possible_ortholog 4 retrogenes
retro_cjac_1109, retro_cjac_1169, retro_cjac_1579, retro_cjac_2047,
Cavia porcellus ENSCPOG00000003854 possible_ortholog 2 retrogenes
retro_cpor_1006, retro_cpor_1415,
Dasypus novemcinctus ENSDNOG00000009300 ortholog_one2many 2 retrogenes
retro_dnov_2505, retro_dnov_503,
Echinops telfairi ENSETEG00000007104 ortholog_one2one 4 retrogenes
retro_etel_1100, retro_etel_264, retro_etel_296, retro_etel_916,
Homo sapiens ENSG00000161016 ortholog_one2one 1 retrogene
retro_hsap_2851,
Gorilla gorilla ENSGGOG00000008164 possible_ortholog 1 retrogene
retro_ggor_1974,
Macropus eugenii ENSMEUG00000013824 possible_ortholog 9 retrogenes
retro_meug_1116, retro_meug_1354, retro_meug_1757, retro_meug_1817, retro_meug_1881, retro_meug_670, retro_meug_941, retro_meug_960, retro_meug_974,
Monodelphis domestica ENSMODG00000004283 possible_ortholog 3 retrogenes
retro_mdom_1055, retro_mdom_1696, retro_mdom_253,
Mustela putorius furo ENSMPUG00000006022 ortholog_one2one 1 retrogene
retro_mputfur_1517,
Mus musculus ENSMUSG00000003970 possible_ortholog 2 retrogenes
retro_mmus_2004, retro_mmus_2112,
Nomascus leucogenys ENSNLEG00000010952 possible_ortholog 2 retrogenes
retro_nleu_1603, retro_nleu_594,
Ornithorhynchus anatinus ENSOANG00000002646 possible_ortholog 1 retrogene
retro_oana_93,
Oryctolagus cuniculus ENSOCUG00000024716 ortholog_one2one 1 retrogene
retro_ocun_146,
Pan troglodytes ENSPTRG00000020716 possible_ortholog 1 retrogene
retro_ptro_1931,
Rattus norvegicus ENSRNOG00000048523 possible_ortholog 2 retrogenes
retro_rnor_122, retro_rnor_239,
Sarcophilus harrisii ENSSHAG00000013568 possible_ortholog 2 retrogenes
retro_shar_482, retro_shar_558,
Tupaia belangeri ENSTBEG00000010363 possible_ortholog 2 retrogenes
retro_tbel_2826, retro_tbel_3453,
Tursiops truncatus ENSTTRG00000013858 ortholog_one2one 1 retrogene
retro_ttru_1147,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1470 85.29 66.15
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2. retro_mmul_1531 69.86 84.05
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Download FASTA sequences of all ENSMMUG00000013379 retrocopies