Parental gene:

RPL8, ENSDNOG00000009300

Aliases:None
Description:ribosomal protein L8 [Source:HGNC Symbol;Acc:10368]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_21173:9600..11628(+)


>ENSDNOG00000009300
ATGGGCCGCGTGATCCGCGGGCAGAGGAAGGGCGCCGGCTCCGTGTTCCGAGCGCACGTGAAGCACCGCAAGGGCGCCGC
GCGCTTGCGCGCCGTGGACTTCGCTGAGCGGCACGGGTACATCAAAGGCATCGTGAAGGACATCATCCACGACCCGGGCC
GCGGCGCGCCCCTCGCCAAGGTGGTCTTCCGGGACCCTTACCGGTTTAAGAAACGGACGGAGCTGTTCATCGCTGCCGAG
GGCATCCACACGGGCCAGTTCGTGTACTGCGGCAAGAAAGCCCAGCTTAACATTGGTAATGTCCTCCCGGTGGGCACCAT
GCCTGAGGGTACCATCGTGTGCTGCCTGGAGGAGAAGCCTGGTGACCGGGGCAAGCTAGCCCGGGCTTCTGGGAACTATG
CCACTGTCATCTCACACAATCCCGAGACCAAGAAGACCCGAGTGAAGCTGCCATCAGGCTCCAAGAAGGTCATTTCCTCG
GCCAACAGAGCTGTGGTTGGTGTGGTGGCCGGGGGTGGCCGCATTGACAAACCCATCCTGAAGGCTGGCCGTGCTTACCA
CAAGTACAAGGCAAAGAGGAATTGCTGGCCTCGTGTAAGGGGCGTGGCCATGAACCCTGTGGAGCATCCCTTTGGTGGTG
GCAACCACCAGCACATCGGAAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGTCGCAAAGTGGGTCTTATTGCTGCC
CGTCGTACTGGGCGACTCCGGGGAACCAAGACTGTGCAAGAGAAAGAGAACTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 779 .43 RPM
SRP012922_cerebellum 331 .85 RPM
SRP012922_heart 344 .33 RPM
SRP012922_kidney 738 .97 RPM
SRP012922_liver 407 .92 RPM
SRP012922_lung 848 .69 RPM
SRP012922_quadricep_muscle 591 .08 RPM
SRP012922_spleen 1161 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017933 ortholog_one2many 1 retrogene
retro_acar_31,
Ailuropoda melanoleuca ENSAMEG00000005395 ortholog_one2one 1 retrogene
retro_amel_241,
Bos taurus ENSBTAG00000026327 ortholog_one2many 1 retrogene
retro_btau_96,
Canis familiaris ENSCAFG00000001677 ortholog_one2one 1 retrogene
retro_cfam_1132,
Callithrix jacchus ENSCJAG00000021388 ortholog_one2many 4 retrogenes
retro_cjac_1109, retro_cjac_1169, retro_cjac_1579, retro_cjac_2047,
Cavia porcellus ENSCPOG00000003854 ortholog_one2one 2 retrogenes
retro_cpor_1006, retro_cpor_1415,
Echinops telfairi ENSETEG00000007104 ortholog_one2one 4 retrogenes
retro_etel_1100, retro_etel_264, retro_etel_296, retro_etel_916,
Felis catus ENSFCAG00000026288 ortholog_one2one 1 retrogene
retro_fcat_570,
Homo sapiens ENSG00000161016 ortholog_one2one 1 retrogene
retro_hsap_2851,
Gorilla gorilla ENSGGOG00000008164 ortholog_one2one 1 retrogene
retro_ggor_1974,
Macaca mulatta ENSMMUG00000013379 ortholog_one2many 2 retrogenes
retro_mmul_1470, retro_mmul_1531,
Mustela putorius furo ENSMPUG00000006022 ortholog_one2many 1 retrogene
retro_mputfur_1517,
Mus musculus ENSMUSG00000003970 ortholog_one2one 2 retrogenes
retro_mmus_2004, retro_mmus_2112,
Nomascus leucogenys ENSNLEG00000010952 ortholog_one2one 2 retrogenes
retro_nleu_1603, retro_nleu_594,
Oryctolagus cuniculus ENSOCUG00000024716 ortholog_one2many 1 retrogene
retro_ocun_146,
Pan troglodytes ENSPTRG00000020716 ortholog_one2one 1 retrogene
retro_ptro_1931,
Rattus norvegicus ENSRNOG00000048523 ortholog_one2many 2 retrogenes
retro_rnor_122, retro_rnor_239,
Tupaia belangeri ENSTBEG00000010363 ortholog_one2one 2 retrogenes
retro_tbel_2826, retro_tbel_3453,
Tursiops truncatus ENSTTRG00000013858 ortholog_one2one 1 retrogene
retro_ttru_1147,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_503 71.63 54.86
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2. retro_dnov_2505 54.64 70.04
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Download FASTA sequences of all ENSDNOG00000009300 retrocopies