Parental gene:

ENSEEUG00000004394

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2117:746..7026(-)


>ENSEEUG00000004394
ATGAAGACTATTCTCAGCAACCAGACCGTCGACATTCCGGAGAATGTCGACATCTCTCTGAAGGGCCGCACGGTCATCGT
GAAGGGCCCCAGAGGCACCCTGCGGAGGGACTTCAACCACATCAACGTGGAGCTCAGTCTCCTCGGAAAGAAAAAGAAGC
GGCTCCGAGTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCTACTGTCCGCACTATCTGCAGCCATGTACAGAACATG
ATCAAGGGTGTTACACTGGGCTTCCGATACAAAATGAGGTCCGTGTATGCTCACTTCCCTATTAACGTTGTTATTCAGGA
GAATGGGTCTCTTGTTGAAATCAGAAACTTCTTGGGAGAAAAATACATACGCAGGGTTCGAATGAGGTCAGGTGTTGCAT
GCTCACTATCGCAAGCCCAGAAAGATGAATTAATTCTTGAAGGAAATGACATCGAACTTGTATCAAATTCA

Library Parental gene expression (RPM)
SRP017611_liver 63 .67 RPM
SRP017611_kidney 96 .58 RPM
SRP017611_brain 49 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 possible_ortholog 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 possible_ortholog 29 retrogenes
Cavia porcellus ENSCPOG00000004543 possible_ortholog 15 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 ortholog_one2one 18 retrogenes
Dipodomys ordii ENSDORG00000001088 possible_ortholog 6 retrogenes
Equus caballus ENSECAG00000016489 possible_ortholog 7 retrogenes
Felis catus ENSFCAG00000012284 possible_ortholog 34 retrogenes
Homo sapiens ENSG00000163682 possible_ortholog 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 possible_ortholog 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000012021 possible_ortholog 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_many2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 possible_ortholog 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2many 7 retrogenes
Mus musculus ENSMUSG00000047215 possible_ortholog 2 retrogenes
Nomascus leucogenys ENSNLEG00000017100 possible_ortholog 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Procavia capensis ENSPCAG00000005834 possible_ortholog 22 retrogenes
Pongo abelii ENSPPYG00000014675 possible_ortholog 10 retrogenes
Rattus norvegicus ENSRNOG00000026716 possible_ortholog 3 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2many 8 retrogenes
Sus scrofa ENSSSCG00000025192 possible_ortholog 15 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000002077 possible_ortholog 13 retrogenes
Tupaia belangeri ENSTBEG00000006042 possible_ortholog 18 retrogenes
Tursiops truncatus ENSTTRG00000014289 possible_ortholog 13 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_11 83.20 79.62
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2. retro_eeur_27 93.33 95.54
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3. retro_eeur_51 75.89 87.90
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4. retro_eeur_65 74.07 84.71
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5. retro_eeur_68 83.33 80.25
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6. retro_eeur_98 67.57 68.15
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7. retro_eeur_136 66.67 52.87
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8. retro_eeur_153 58.40 78.98
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9. retro_eeur_162 65.38 82.17
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10. retro_eeur_184 80.30 82.80
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11. retro_eeur_191 79.01 51.59
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12. retro_eeur_229 79.76 52.87
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13. retro_eeur_246 67.82 52.87
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14. retro_eeur_279 80.38 100.00
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15. retro_eeur_280 90.57 100.00
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16. retro_eeur_282 52.86 87.90
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17. retro_eeur_296 87.97 84.71
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18. retro_eeur_307 62.35 54.14
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19. retro_eeur_352 84.17 75.80
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20. retro_eeur_383 79.09 69.43
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21. retro_eeur_399 68.35 99.36
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22. retro_eeur_410 80.92 82.80
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23. retro_eeur_429 76.12 84.71
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24. retro_eeur_433 83.44 100.00
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25. retro_eeur_449 89.13 87.26
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26. retro_eeur_453 98.92 59.24
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27. retro_eeur_461 65.38 82.17
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28. retro_eeur_471 85.42 60.51
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29. retro_eeur_486 83.64 69.43
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30. retro_eeur_493 64.97 99.36
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31. retro_eeur_540 71.09 80.89
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32. retro_eeur_572 90.57 100.00
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33. retro_eeur_590 80.61 99.36
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34. retro_eeur_599 87.90 98.73
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35. retro_eeur_600 95.18 52.87
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36. retro_eeur_619 85.62 96.82
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37. retro_eeur_624 89.81 100.00
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38. retro_eeur_670 95.28 80.25
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39. retro_eeur_678 82.80 100.00
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Download FASTA sequences of all ENSEEUG00000004394 retrocopies