RetrogeneDB ID:

retro_mluc_1261

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429810:6354399..6354974(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000004597
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1261
ATGAAGACCATTCTCAGCAATTAGACTGTTGACATTCCAAAAAATGTGGACATCACTCGGAAGGGACACATAGTTACTGT
GAAAGGCCCCAGATGCACCCTGAAGACCGACTTCAATCACATCAATGTAGAACTCAGTCTCCTTGGAAAGAAAAAGAAGA
GGCTCCAGGTTGACAAATGGTGGGGAAATAGAAAGGAACTGGCTACCATTCACACTATCTGCAGTCATGTAACGACCATG
ATTGAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGAACGCTCACTTCCACATCAAGGTCATTATTCAGGA
GAATGGTTCTCTTGTTGAAATCAGAAATTTCTTGTGTGAAAAACACATCCACAGTGTTTGGATGAGATCAGGTGTGCTTT
TTCAGTTATCTGAATCCCAGAAAGATGAGTTAATTCTTGAAGGAGATGACATTAAACTTGTATTAATTTTAGCTGTTTGA
TTCAGCAAGCCACAACAGTTTAAAAAAAAGATATCAGAAAATCTGGGAATGGTATCTAGTTTTCTGAAAAAGAAACAGGA
CAGCAGGCTGATAAA

ORF - retro_mluc_1261 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.13 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATV
MKTILSN.TVDIP.NVDIT.KG..V.VKGPR.TL..DFNHINVELSLLGKKKKRL.VDKWWGNRKELAT.
RetrocopyMKTILSN*TVDIPKNVDITRKGHIVTVKGPRCTLKTDFNHINVELSLLGKKKKRLQVDKWWGNRKELATI
ParentalRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRSGVACSVSQAQ
.TICSHV..MI.GVTLGFRYKMRSV.AHF.I.V.IQENGSLVEIRNFL.EK.I..V.MRSGV....S..Q
RetrocopyHTICSHVTTMIEGVTLGFRYKMRSVNAHFHIKVIIQENGSLVEIRNFLCEKHIHSVWMRSGVLFQLSESQ
ParentalKDELILEGNDIELV-SNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE
KDELILEG.DI.LV..N...LIQQATTV...DIRK...GI..SEK.T.QQAD.
RetrocopyKDELILEGDDIKLV<INFSCLIQQATTVXXXDIRKSGNGI*FSEKETGQQADK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide