Parental gene:

RPL9, ENSECAG00000016489

Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:Horse (Equus caballus)
Coordinates:3:87870069..87873853(+)


>ENSECAG00000016489
ATGAAGACCATTCTCAGCAATCAGACCGTCGACATTCCGGAAAATGTCGACATCACTCTGAAGGGACGCACAGTTATTGT
GAAGGGCCCCAGGGGAACCCTCCGGAGGGACTTCAATCACATCAACGTGGAACTCAGTCTCCTTGGCAAGAAGAAGAAGA
GGCTCCGAGTTGACAAATGGTGGGGAAACAGAAAGGAGCTGGCTACCGTCCGCACGATCTGTAGTCACGTCCAGAACATG
ATCAAGGGTGTTACGCTGGGCTTCCGTTACAAGATGAGGTCTGTGTACGCTCACTTCCCCATCAACGTCGTCATTCAGGA
GAATGGTTCTCTTGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTAGGATGAGGCCAGGCGTTGCTT
GTTCAGTATCTCAAGCCCAGAAAGATGAGTTAATTCTTGAAGGAAATGACATTGAACTTGTATCAAATTCAGCTGCTTTG
ATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGAAAATTTTTGGATGGTATCTATGTTTCTGAAAAAGGAACAGT
TCAGCAGGCTGATGAATAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 422 .90 RPM
SRP021940_embryo 519 .56 RPM
SRP021940_cerebellum 227 .52 RPM
SRP021940_testis 173 .99 RPM
SRP021940_placental_villous 418 .61 RPM
SRP021940_articular_cartilage 957 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2one 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000014518 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2one 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 ortholog_one2one 29 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2one 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Felis catus ENSFCAG00000012284 ortholog_one2one 34 retrogenes
Homo sapiens ENSG00000163682 ortholog_one2one 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 ortholog_one2one 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000012021 ortholog_one2many 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_one2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 ortholog_one2one 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 ortholog_one2many 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000017100 ortholog_one2one 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Pongo abelii ENSPPYG00000014675 ortholog_one2one 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2one 8 retrogenes
Sus scrofa ENSSSCG00000025192 ortholog_one2one 15 retrogenes
Tupaia belangeri ENSTBEG00000006042 ortholog_one2many 18 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_183 52.38 85.94
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2. retro_ecab_368 67.91 96.35
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3. retro_ecab_405 81.35 100.00
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4. retro_ecab_630 60.16 61.98
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5. retro_ecab_638 68.35 81.25
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6. retro_ecab_818 60.83 60.42
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7. retro_ecab_867 71.50 100.00
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Download FASTA sequences of all ENSECAG00000016489 retrocopies